RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 SGO2Q562F6 1265 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 ATG4CQ96DT6 458 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 MRPL47Q9HD33 250 aaKnown RBP11.83□□□□□ -0.52
HDAC6-228ENST00000486227 JPH1Q9HDC5 661 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-228ENST00000486227 PLSCR1O15162 318 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 ZNF746Q6NUN9 644 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-228ENST00000486227 PDXDC1Q6P996 788 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 FRMD5Q7Z6J6 570 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 ELOA2Q8IYF1 753 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-228ENST00000486227 INTS2Q9H0H0 1204 aaKnown RBP11.83□□□□□ -0.52
HDAC6-228ENST00000486227 KCNQ5Q9NR82 932 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 MYBP10242 640 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 CD44P16070 742 aaKnown RBP11.82□□□□□ -0.52
HDAC6-228ENST00000486227 FYB2Q5VWT5 728 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 ELMSAN1Q6PJG2 1045 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 SNX25Q9H3E2 840 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 INTS9Q9NV88 658 aaKnown RBP11.82□□□□□ -0.52
HDAC6-228ENST00000486227 VIRMAQ69YN4 1812 aaKnown RBP11.82□□□□□ -0.52
HDAC6-228ENST00000486227 SHMT1P34896 483 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 CAP2P40123 477 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 SURF1Q15526 300 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 BEND6Q5SZJ8 279 aaPredicted RBP11.82□□□□□ -0.52
HDAC6-228ENST00000486227 RSRC2Q7L4I2 434 aaKnown RBP11.82□□□□□ -0.52
HDAC6-228ENST00000486227 CATSPER3Q86XQ3 398 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 CCHCR1Q8TD31 782 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 RUBCNQ92622 972 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 KIAA1586Q9HCI6 787 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 FAM114A2Q9NRY5 505 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 FMN2Q9NZ56 1722 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 CCL15-CCL14A0A0B4J2E2 113 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 MEFVO15553 781 aaPredicted RBP11.82□□□□□ -0.52
HDAC6-228ENST00000486227 NCK2O43639 380 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 CTNND1O60716 968 aaKnown RBP11.82□□□□□ -0.52
HDAC6-228ENST00000486227 SUN1O94901 812 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 CETPP11597 493 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 CXCL9Q07325 125 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 GRB10Q13322 594 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 BIRC2Q13490 618 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 CCL15Q16663 113 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 ZC2HC1CQ53FD0 456 aaPredicted RBP11.82□□□□□ -0.52
HDAC6-228ENST00000486227 HHATQ5VTY9 493 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 RAD9BQ6WBX8 426 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 TRIM50Q86XT4 487 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 GLYCTKQ8IVS8 523 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 RHOT2Q8IXI1 618 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 PALM2Q8IXS6 379 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 GSPT2Q8IYD1 628 aaKnown RBP11.82□□□□□ -0.52
HDAC6-228ENST00000486227 RIOX1Q9H6W3 641 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 KCND1Q9NSA2 647 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 ITIH3Q06033 890 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 RHPN2Q8IUC4 686 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 GTF3C2Q8WUA4 911 aaPredicted RBP11.82□□□□□ -0.52
HDAC6-228ENST00000486227 MXRA8Q9BRK3 442 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 EHD4Q9H223 541 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 NFU1Q9UMS0 254 aa11.82□□□□□ -0.52
HDAC6-228ENST00000486227 LRRD1A4D1F6 860 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 EIF3HO15372 352 aaKnown RBP eCLIP11.81□□□□□ -0.522e-6■■■□□ 16.8
HDAC6-228ENST00000486227 FGGP02679 453 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 VEGFAP15692 232 aaPredicted RBP11.81□□□□□ -0.52
HDAC6-228ENST00000486227 STX2P32856 288 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 RPUSD2Q8IZ73 545 aaKnown RBP11.81□□□□□ -0.52
HDAC6-228ENST00000486227 FAM163AQ96GL9 167 aaPredicted RBP11.81□□□□□ -0.52
HDAC6-228ENST00000486227 EDEM3Q9BZQ6 932 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 ATP8A1Q9Y2Q0 1164 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 H7C0C1 242 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 MSH4O15457 936 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 GYPCP04921 128 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 ATP5OP48047 213 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 RPS6P62753 249 aaKnown RBP11.81□□□□□ -0.52
HDAC6-228ENST00000486227 ZNF568Q3ZCX4 644 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 KRT39Q6A163 491 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 NFRKBQ6P4R8 1299 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 SPATA24Q86W54 205 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 ADARB2Q9NS39 739 aaKnown RBP11.81□□□□□ -0.52
HDAC6-228ENST00000486227 CNOT8Q9UFF9 292 aaKnown RBP11.81□□□□□ -0.52
HDAC6-228ENST00000486227 ACTN1P12814 892 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 SREBF2Q12772 1141 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 MYO1EQ12965 1108 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 ZNF667Q5HYK9 610 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 TMEM270Q6UE05 265 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 PASD1Q8IV76 773 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 P3H4Q92791 437 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 ARHGEF2Q92974 986 aaKnown RBP11.81□□□□□ -0.52
HDAC6-228ENST00000486227 ZKSCAN4Q969J2 545 aaPredicted RBP11.81□□□□□ -0.52
HDAC6-228ENST00000486227 SPATA33Q96N06 139 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 KCNH7Q9NS40 1196 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 ADAM22Q9P0K1 906 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 CCDC160A6NGH7 325 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 ELF1P32519 619 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 TRIM68Q6AZZ1 485 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 KCNV1Q6PIU1 500 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 MAP7D3Q8IWC1 876 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 HEXIM2Q96MH2 286 aaKnown RBP11.81□□□□□ -0.52
HDAC6-228ENST00000486227 KLC4Q9NSK0 619 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 HPCAL4Q9UM19 191 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 L1RE1Q9UN81 338 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 PEAK1Q9H792 1746 aa11.81□□□□□ -0.52
HDAC6-228ENST00000486227 SLIT3O75094 1523 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 KRT1P04264 644 aa11.8□□□□□ -0.52
HDAC6-228ENST00000486227 DYNLT1P63172 113 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms