RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 MED24O75448 989 aa20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 HOXA11P31270 313 aaPredicted RBP20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 GTF2F1P35269 517 aaKnown RBP eCLIP20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 ARL2P36404 184 aa20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 MCM2P49736 904 aa20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 PTENP60484 403 aa20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 ADAM15Q13444 863 aa20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 TFDP1Q14186 410 aa20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 PCBP1Q15365 356 aaKnown RBP eCLIP20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 PTCRAQ6ISU1 281 aaPredicted RBP20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 KCNT2Q6UVM3 1135 aa20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 ERMNQ8TAM6 284 aa20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 MICAL1Q8TDZ2 1067 aa20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 ZNF558Q96NG5 402 aa20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 NACC1Q96RE7 527 aa20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 MRPL9Q9BYD2 267 aaKnown RBP20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 LZTS1Q9Y250 596 aa20.49■□□□□ 0.87
PRPF40A-209ENST00000486100 GRXCR2A6NFK2 248 aa20.48■□□□□ 0.87
PRPF40A-209ENST00000486100 RPA1P27694 616 aa20.48■□□□□ 0.87
PRPF40A-209ENST00000486100 PDE12Q6L8Q7 609 aaKnown RBP20.48■□□□□ 0.87
PRPF40A-209ENST00000486100 ADGRD2Q7Z7M1 963 aa20.48■□□□□ 0.87
PRPF40A-209ENST00000486100 IFNLR1Q8IU57 520 aaPredicted RBP20.48■□□□□ 0.87
PRPF40A-209ENST00000486100 MRPS27Q92552 414 aaKnown RBP20.48■□□□□ 0.87
PRPF40A-209ENST00000486100 LPPQ93052 612 aa20.48■□□□□ 0.87
PRPF40A-209ENST00000486100 PGBD4Q96DM1 585 aa20.48■□□□□ 0.87
PRPF40A-209ENST00000486100 TBC1D32Q96NH3 1257 aa20.48■□□□□ 0.87
PRPF40A-209ENST00000486100 TLR9Q9NR96 1032 aa20.48■□□□□ 0.87
PRPF40A-209ENST00000486100 PUF60Q9UHX1 559 aaKnown RBP20.48■□□□□ 0.87
PRPF40A-209ENST00000486100 DBR1Q9UK59 544 aaKnown RBP20.48■□□□□ 0.87
PRPF40A-209ENST00000486100 CD2BP2O95400 341 aaKnown RBP20.47■□□□□ 0.87
PRPF40A-209ENST00000486100 PPM1AP35813 382 aa20.47■□□□□ 0.87
PRPF40A-209ENST00000486100 TOB1P50616 345 aaPredicted RBP20.47■□□□□ 0.87
PRPF40A-209ENST00000486100 ERVFC1P60507 584 aa20.47■□□□□ 0.87
PRPF40A-209ENST00000486100 NBR1Q14596 966 aa20.47■□□□□ 0.87
PRPF40A-209ENST00000486100 MRPL10Q7Z7H8 261 aaKnown RBP20.47■□□□□ 0.87
PRPF40A-209ENST00000486100 ASAP3Q8TDY4 903 aa20.47■□□□□ 0.87
PRPF40A-209ENST00000486100 SPG21Q9NZD8 308 aa20.47■□□□□ 0.87
PRPF40A-209ENST00000486100 PCDHB2Q9Y5E7 798 aa20.47■□□□□ 0.87
PRPF40A-209ENST00000486100 FNDC1Q4ZHG4 1894 aaPredicted RBP20.46■□□□□ 0.87
PRPF40A-209ENST00000486100 OFD1O75665 1012 aa20.46■□□□□ 0.87
PRPF40A-209ENST00000486100 IL9P15248 144 aa20.46■□□□□ 0.87
PRPF40A-209ENST00000486100 MUTP22033 750 aa20.46■□□□□ 0.87
PRPF40A-209ENST00000486100 AXLP30530 894 aa20.46■□□□□ 0.87
PRPF40A-209ENST00000486100 FXR2P51116 673 aaKnown RBP eCLIP20.46■□□□□ 0.875e-9■■■□□ 17.7
PRPF40A-209ENST00000486100 KRT17Q04695 432 aa20.46■□□□□ 0.87
PRPF40A-209ENST00000486100 DLX2Q07687 328 aaPredicted RBP20.46■□□□□ 0.87
PRPF40A-209ENST00000486100 PDIA5Q14554 519 aa20.46■□□□□ 0.87
PRPF40A-209ENST00000486100 LONRF3Q496Y0 759 aa20.46■□□□□ 0.87
PRPF40A-209ENST00000486100 GLB1LQ6UWU2 654 aa20.46■□□□□ 0.87
PRPF40A-209ENST00000486100 EFHBQ8N7U6 833 aa20.46■□□□□ 0.87
PRPF40A-209ENST00000486100 NFKBIZQ9BYH8 718 aa20.46■□□□□ 0.87
PRPF40A-209ENST00000486100 FAM50BQ9Y247 325 aa20.46■□□□□ 0.87
PRPF40A-209ENST00000486100 PCDHGC5Q9Y5F6 944 aa20.46■□□□□ 0.87
PRPF40A-209ENST00000486100 MEIS3P2A8K0S8 358 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 FSCN2O14926 492 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 LINC01565O15544 149 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 USO1O60763 962 aaKnown RBP20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 ERLIN2O94905 339 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 GLRA2P23416 452 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 PBX3P40426 434 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 NRIP1P48552 1158 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 ALDH7A1P49419 539 aaKnown RBP20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 NCBP1Q09161 790 aaKnown RBP20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 PTGDRQ13258 359 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 CAPSQ13938 189 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 NOMO2Q5JPE7 1267 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 UBXN11Q5T124 520 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 HAUS3Q68CZ6 603 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 RBM23Q86U06 439 aaKnown RBP20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 FAM178BQ8IXR5 827 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 SLC39A11Q8N1S5 342 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 POLR3FQ9H1D9 316 aaPredicted RBP20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 TLE6Q9H808 572 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 LRWD1Q9UFC0 647 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 PCDHB6Q9Y5E3 794 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 MYO7AQ13402 2215 aa20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 TCF20Q9UGU0 1960 aaKnown RBP20.45■□□□□ 0.86
PRPF40A-209ENST00000486100 CARNS1A5YM72 827 aa20.44■□□□□ 0.86
PRPF40A-209ENST00000486100 INO80B-WBP1J3KQ70 363 aa20.44■□□□□ 0.86
PRPF40A-209ENST00000486100 TSPAN1O60635 241 aa20.44■□□□□ 0.86
PRPF40A-209ENST00000486100 GJB2P29033 226 aa20.44■□□□□ 0.86
PRPF40A-209ENST00000486100 BCAR1P56945 870 aa20.44■□□□□ 0.86
PRPF40A-209ENST00000486100 MCTP1Q6DN14 999 aa20.44■□□□□ 0.86
PRPF40A-209ENST00000486100 POTEGQ6S5H5 508 aa20.44■□□□□ 0.86
PRPF40A-209ENST00000486100 AGMOQ6ZNB7 445 aa20.44■□□□□ 0.86
PRPF40A-209ENST00000486100 MAEAQ7L5Y9 396 aa20.44■□□□□ 0.86
PRPF40A-209ENST00000486100 CNNM3Q8NE01 707 aa20.44■□□□□ 0.86
PRPF40A-209ENST00000486100 MCPH1Q8NEM0 835 aa20.44■□□□□ 0.86
PRPF40A-209ENST00000486100 NGRNQ9NPE2 291 aaKnown RBP20.44■□□□□ 0.86
PRPF40A-209ENST00000486100 STK24Q9Y6E0 443 aa20.44■□□□□ 0.86
PRPF40A-209ENST00000486100 MUC3AQ02505 3323 aa20.43■□□□□ 0.86
PRPF40A-209ENST00000486100 BRWD1Q9NSI6 2320 aa20.43■□□□□ 0.86
PRPF40A-209ENST00000486100 LAD1O00515 517 aa20.43■□□□□ 0.86
PRPF40A-209ENST00000486100 TBX10O75333 385 aa20.43■□□□□ 0.86
PRPF40A-209ENST00000486100 NCLP19338 710 aaKnown RBP20.43■□□□□ 0.86
PRPF40A-209ENST00000486100 CCT6AP40227 531 aaKnown RBP20.43■□□□□ 0.86
PRPF40A-209ENST00000486100 NDUFV1P49821 464 aa20.43■□□□□ 0.86
PRPF40A-209ENST00000486100 MBTD1Q05BQ5 628 aa20.43■□□□□ 0.86
PRPF40A-209ENST00000486100 NOTUMQ6P988 496 aa20.43■□□□□ 0.86
PRPF40A-209ENST00000486100 CCDC51Q96ER9 411 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms