RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 NPEPPSP55786 919 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 UBE3AQ05086 875 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 DRP2Q13474 957 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 CCDC85BQ15834 202 aaPredicted RBP7.82□□□□□ -1.16
VPS50-218ENST00000485994 NCAPH2Q6IBW4 605 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 ZNF598Q86UK7 904 aaKnown RBP7.82□□□□□ -1.16
VPS50-218ENST00000485994 ECHDC2Q86YB7 292 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 TPH2Q8IWU9 490 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 SPPL3Q8TCT6 385 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 GDPD5Q8WTR4 605 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 PRPF31Q8WWY3 499 aaKnown RBP7.82□□□□□ -1.16
VPS50-218ENST00000485994 NLRP7Q8WX94 980 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 PPM1EQ8WY54 764 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 TMX3Q96JJ7 454 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 FDXACB1Q9BRP7 624 aaPredicted RBP7.82□□□□□ -1.16
VPS50-218ENST00000485994 NFKBIZQ9BYH8 718 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 TMEM117Q9H0C3 514 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 TMEM60Q9H2L4 133 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 ATP6V0A4Q9HBG4 840 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 PRDM6Q9NQX0 595 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 AAASQ9NRG9 546 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 DBR1Q9UK59 544 aaKnown RBP7.82□□□□□ -1.16
VPS50-218ENST00000485994 LRFN2Q9ULH4 789 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 PLAGL2Q9UPG8 496 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 GINS2Q9Y248 185 aa7.82□□□□□ -1.16
VPS50-218ENST00000485994 TCF20Q9UGU0 1960 aaKnown RBP7.81□□□□□ -1.16
VPS50-218ENST00000485994 ZBTB39O15060 712 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 SFPQP23246 707 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS50-218ENST00000485994 AXLP30530 894 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 ARL2P36404 184 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 PRPHP41219 470 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 POLGP54098 1239 aaPredicted RBP7.81□□□□□ -1.16
VPS50-218ENST00000485994 PTENP60484 403 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 PLCB3Q01970 1234 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 GUCY1B3Q02153 619 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 LAMTOR4Q0VGL1 99 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 CAMK1Q14012 370 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 CTTNQ14247 550 aaKnown RBP7.81□□□□□ -1.16
VPS50-218ENST00000485994 TIGD5Q53EQ6 642 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 XKR9Q5GH70 373 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 PDE12Q6L8Q7 609 aaKnown RBP7.81□□□□□ -1.16
VPS50-218ENST00000485994 MRPL10Q7Z7H8 261 aaKnown RBP7.81□□□□□ -1.16
VPS50-218ENST00000485994 FERMT3Q86UX7 667 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 CATSPER3Q86XQ3 398 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 RHPN2Q8IUC4 686 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 IGSF22Q8N9C0 903 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 ANKK1Q8NFD2 765 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 PSPC1Q8WXF1 523 aaKnown RBP7.81□□□□□ -1.16
VPS50-218ENST00000485994 CASD1Q96PB1 797 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 NACC1Q96RE7 527 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 CWH43Q9H720 699 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 NOL7Q9UMY1 257 aaKnown RBP7.81□□□□□ -1.16
VPS50-218ENST00000485994 LZTS1Q9Y250 596 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.81□□□□□ -1.16
VPS50-218ENST00000485994 COL4A3BPQ9Y5P4 624 aa7.81□□□□□ -1.16
VPS50-218ENST00000485994 MRPL42Q9Y6G3 142 aaKnown RBP7.81□□□□□ -1.16
VPS50-218ENST00000485994 TMEM150BA6NC51 233 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 ITGB1P05556 798 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 OR52Z1P0C646 297 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 HOXA11P31270 313 aaPredicted RBP7.8□□□□□ -1.16
VPS50-218ENST00000485994 MCM7P33993 719 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 CTNNB1P35222 781 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 TECP42680 631 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 PHKA2P46019 1235 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 RARRES1P49788 294 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 TOB1P50616 345 aaPredicted RBP7.8□□□□□ -1.16
VPS50-218ENST00000485994 RAB27AP51159 221 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 CUL4AQ13619 759 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 ZNF174Q15697 407 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 CTC1Q2NKJ3 1217 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 PUS10Q3MIT2 529 aaKnown RBP7.8□□□□□ -1.16
VPS50-218ENST00000485994 LEXMQ3ZCV2 418 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 RILPL1Q5EBL4 403 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 TTC38Q5R3I4 469 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 FAM102BQ5T8I3 360 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 PLA2G4FQ68DD2 849 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 CNNM3Q8NE01 707 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 ERMNQ8TAM6 284 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 PABPC5Q96DU9 382 aaKnown RBP7.8□□□□□ -1.16
VPS50-218ENST00000485994 MTRQ99707 1265 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 SH2D3AQ9BRG2 576 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 BACH2Q9BYV9 841 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 RAB34Q9BZG1 259 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 NSUN3Q9H649 340 aaKnown RBP7.8□□□□□ -1.16
VPS50-218ENST00000485994 XPNPEP1Q9NQW7 623 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.8□□□□□ -1.16
VPS50-218ENST00000485994 RNF19AQ9NV58 838 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 TYW1Q9NV66 732 aaKnown RBP7.8□□□□□ -1.16
VPS50-218ENST00000485994 MTUS1Q9ULD2 1270 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 PCDHB12Q9Y5F1 795 aa7.8□□□□□ -1.16
VPS50-218ENST00000485994 FSD2A1L4K1 749 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 TBKBP1A7MCY6 615 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 RBAK-RBAKDNI3L0D1 243 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 GRM6O15303 877 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 CD2BP2O95400 341 aaKnown RBP7.79□□□□□ -1.16
VPS50-218ENST00000485994 ATF7P17544 494 aaPredicted RBP7.79□□□□□ -1.16
VPS50-218ENST00000485994 LAG3P18627 525 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 CYP4A11Q02928 519 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 NCBP1Q09161 790 aaKnown RBP7.79□□□□□ -1.16
VPS50-218ENST00000485994 PTGDRQ13258 359 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms