RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 SYKP43405 635 aa18.91■□□□□ 0.62
VIM-205ENST00000485947 SPIRE1Q08AE8 756 aa18.91■□□□□ 0.62
VIM-205ENST00000485947 SNW1Q13573 536 aaKnown RBP18.91■□□□□ 0.62
VIM-205ENST00000485947 DSC3Q14574 896 aa18.91■□□□□ 0.62
VIM-205ENST00000485947 MTERF2Q49AM1 385 aa18.91■□□□□ 0.62
VIM-205ENST00000485947 LRRC71Q8N4P6 559 aa18.91■□□□□ 0.62
VIM-205ENST00000485947 BANK1Q8NDB2 785 aa18.91■□□□□ 0.62
VIM-205ENST00000485947 SLC7A3Q8WY07 619 aa18.91■□□□□ 0.62
VIM-205ENST00000485947 TIGD1Q96MW7 591 aa18.91■□□□□ 0.62
VIM-205ENST00000485947 UHRF1Q96T88 793 aaPredicted RBP18.91■□□□□ 0.62
VIM-205ENST00000485947 GCOM2Q9BZD3 368 aaPredicted RBP18.91■□□□□ 0.62
VIM-205ENST00000485947 TTC12Q9H892 705 aaPredicted RBP18.91■□□□□ 0.62
VIM-205ENST00000485947 CYP26B1Q9NR63 512 aa18.91■□□□□ 0.62
VIM-205ENST00000485947 CHST12Q9NRB3 414 aa18.91■□□□□ 0.62
VIM-205ENST00000485947 TMEM63CQ9P1W3 806 aa18.91■□□□□ 0.62
VIM-205ENST00000485947 KCNH3Q9ULD8 1083 aa18.91■□□□□ 0.62
VIM-205ENST00000485947 STK24Q9Y6E0 443 aa18.91■□□□□ 0.62
VIM-205ENST00000485947 TRANK1O15050 2925 aa18.9■□□□□ 0.62
VIM-205ENST00000485947 TCF20Q9UGU0 1960 aaKnown RBP18.9■□□□□ 0.62
VIM-205ENST00000485947 SLC26A4O43511 780 aa18.9■□□□□ 0.62
VIM-205ENST00000485947 LETM1O95202 739 aaPredicted RBP18.9■□□□□ 0.62
VIM-205ENST00000485947 LYPLA2O95372 231 aa18.9■□□□□ 0.62
VIM-205ENST00000485947 CTNNB1P35222 781 aa18.9■□□□□ 0.62
VIM-205ENST00000485947 CCSER1Q9C0I3 900 aa18.9■□□□□ 0.62
VIM-205ENST00000485947 NUP62CLQ9H1M0 184 aa18.9■□□□□ 0.62
VIM-205ENST00000485947 CLSTN2Q9H4D0 955 aa18.9■□□□□ 0.62
VIM-205ENST00000485947 USP25Q9UHP3 1055 aa18.9■□□□□ 0.62
VIM-205ENST00000485947 ARIH1Q9Y4X5 557 aaPredicted RBP18.9■□□□□ 0.62
VIM-205ENST00000485947 EVPLQ92817 2033 aa18.9■□□□□ 0.62
VIM-205ENST00000485947 REV3LO60673 3130 aa18.89■□□□□ 0.61
VIM-205ENST00000485947 ZNF202O95125 648 aa18.89■□□□□ 0.61
VIM-205ENST00000485947 TECP42680 631 aa18.89■□□□□ 0.61
VIM-205ENST00000485947 SPECC1Q5M775 1068 aa18.89■□□□□ 0.61
VIM-205ENST00000485947 NLRP7Q8WX94 980 aa18.89■□□□□ 0.61
VIM-205ENST00000485947 SCLT1Q96NL6 688 aa18.89■□□□□ 0.61
VIM-205ENST00000485947 LXNQ9BS40 222 aa18.89■□□□□ 0.61
VIM-205ENST00000485947 TRAIPQ9BWF2 469 aa18.89■□□□□ 0.61
VIM-205ENST00000485947 ATP6V0A4Q9HBG4 840 aa18.89■□□□□ 0.61
VIM-205ENST00000485947 AAASQ9NRG9 546 aa18.89■□□□□ 0.61
VIM-205ENST00000485947 LRWD1Q9UFC0 647 aa18.89■□□□□ 0.61
VIM-205ENST00000485947 WDR81Q562E7 1941 aa18.89■□□□□ 0.61
VIM-205ENST00000485947 RALGAPA2Q2PPJ7 1873 aa18.88■□□□□ 0.61
VIM-205ENST00000485947 XIRP2A4UGR9 3374 aa18.88■□□□□ 0.61
VIM-205ENST00000485947 ASAP2O43150 1006 aa18.88■□□□□ 0.61
VIM-205ENST00000485947 MGEA5O60502 916 aa18.88■□□□□ 0.61
VIM-205ENST00000485947 XRCC6P12956 609 aaKnown RBP eCLIP18.88■□□□□ 0.61
VIM-205ENST00000485947 SFPQP23246 707 aaKnown RBP eCLIP18.88■□□□□ 0.61
VIM-205ENST00000485947 YWHABP31946 246 aaKnown RBP18.88■□□□□ 0.61
VIM-205ENST00000485947 UBA7P41226 1012 aa18.88■□□□□ 0.61
VIM-205ENST00000485947 PCBP1Q15365 356 aaKnown RBP eCLIP18.88■□□□□ 0.61
VIM-205ENST00000485947 ELOA2Q8IYF1 753 aaPredicted RBP18.88■□□□□ 0.61
VIM-205ENST00000485947 TCP11Q8WWU5 503 aa18.88■□□□□ 0.61
VIM-205ENST00000485947 CCDC34Q96HJ3 373 aa18.88■□□□□ 0.61
VIM-205ENST00000485947 EPSTI1Q96J88 318 aa18.88■□□□□ 0.61
VIM-205ENST00000485947 CEP170P1Q96L14 293 aa18.88■□□□□ 0.61
VIM-205ENST00000485947 HSD17B14Q9BPX1 270 aa18.88■□□□□ 0.61
VIM-205ENST00000485947 DHX33Q9H6R0 707 aaKnown RBP18.88■□□□□ 0.61
VIM-205ENST00000485947 SUCLA2Q9P2R7 463 aaPredicted RBP18.88■□□□□ 0.61
VIM-205ENST00000485947 CCDC39Q9UFE4 941 aa18.88■□□□□ 0.61
VIM-205ENST00000485947 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.87■□□□□ 0.61
VIM-205ENST00000485947 CARNS1A5YM72 827 aa18.87■□□□□ 0.61
VIM-205ENST00000485947 EOMESO95936 686 aa18.87■□□□□ 0.61
VIM-205ENST00000485947 SKIP12755 728 aa18.87■□□□□ 0.61
VIM-205ENST00000485947 NCAPH2Q6IBW4 605 aa18.87■□□□□ 0.61
VIM-205ENST00000485947 USP49Q70CQ1 688 aa18.87■□□□□ 0.61
VIM-205ENST00000485947 CABP7Q86V35 215 aa18.87■□□□□ 0.61
VIM-205ENST00000485947 NSUN3Q9H649 340 aaKnown RBP18.87■□□□□ 0.61
VIM-205ENST00000485947 ANKEF1Q9NU02 776 aa18.87■□□□□ 0.61
VIM-205ENST00000485947 MRPL42Q9Y6G3 142 aaKnown RBP18.87■□□□□ 0.61
VIM-205ENST00000485947 COL4A4P53420 1690 aaPredicted RBP18.86■□□□□ 0.61
VIM-205ENST00000485947 A0A0U1RQF3 1178 aa18.86■□□□□ 0.61
VIM-205ENST00000485947 SLITRK3O94933 977 aa18.86■□□□□ 0.61
VIM-205ENST00000485947 BMP1P13497 986 aa18.86■□□□□ 0.61
VIM-205ENST00000485947 POLGP54098 1239 aaPredicted RBP18.86■□□□□ 0.61
VIM-205ENST00000485947 UBE3AQ05086 875 aa18.86■□□□□ 0.61
VIM-205ENST00000485947 COL19A1Q14993 1142 aa18.86■□□□□ 0.61
VIM-205ENST00000485947 KRT79Q5XKE5 535 aa18.86■□□□□ 0.61
VIM-205ENST00000485947 KANK3Q6NY19 840 aa18.86■□□□□ 0.61
VIM-205ENST00000485947 PSPC1Q8WXF1 523 aaKnown RBP18.86■□□□□ 0.61
VIM-205ENST00000485947 PPP2R3CQ969Q6 453 aa18.86■□□□□ 0.61
VIM-205ENST00000485947 PPP1R16BQ96T49 567 aa18.86■□□□□ 0.61
VIM-205ENST00000485947 EIF2AK1Q9BQI3 630 aaKnown RBP18.86■□□□□ 0.61
VIM-205ENST00000485947 C1QTNF1Q9BXJ1 281 aa18.86■□□□□ 0.61
VIM-205ENST00000485947 TMEM117Q9H0C3 514 aa18.86■□□□□ 0.61
VIM-205ENST00000485947 TNMDQ9H2S6 317 aa18.86■□□□□ 0.61
VIM-205ENST00000485947 PLAGL2Q9UPG8 496 aa18.86■□□□□ 0.61
VIM-205ENST00000485947 POTEMA6NI47 508 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 POLR2DO15514 142 aaKnown RBP18.85■□□□□ 0.61
VIM-205ENST00000485947 POU5F1BQ06416 359 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 DRP2Q13474 957 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 PUS10Q3MIT2 529 aaKnown RBP18.85■□□□□ 0.61
VIM-205ENST00000485947 ZSCAN23Q3MJ62 389 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 HAUS3Q68CZ6 603 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 KRBA2Q6ZNG9 492 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 SRGAP1Q7Z6B7 1085 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 RHPN2Q8IUC4 686 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 IQUBQ8NA54 791 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 ERMNQ8TAM6 284 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 CALML4Q96GE6 196 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 DYDC2Q96IM9 177 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms