RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 DNAJB2P25686 324 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 RANBP2P49792 3224 aaKnown RBP13.09□□□□□ -0.31
HPS4-214ENST00000485842 FXR1P51114 621 aaKnown RBP eCLIP13.09□□□□□ -0.31
HPS4-214ENST00000485842 PEX3P56589 373 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 MBTD1Q05BQ5 628 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 POU5F1BQ06416 359 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 DSC3Q14574 896 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 RAB30Q15771 203 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 ARSHQ5FYA8 562 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 SV2BQ7L1I2 683 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 IFNLR1Q8IU57 520 aaPredicted RBP13.09□□□□□ -0.31
HPS4-214ENST00000485842 PBX4Q9BYU1 374 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 C2orf40Q9H1Z8 148 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 NKX2-4Q9H2Z4 354 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 ZHX3Q9H4I2 956 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 MSRAQ9UJ68 235 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 ADGRA3Q8IWK6 1321 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 TTC3P53804 2025 aa13.08□□□□□ -0.31
HPS4-214ENST00000485842 POLR2DO15514 142 aaKnown RBP13.08□□□□□ -0.32
HPS4-214ENST00000485842 TSPAN1O60635 241 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 GJB5O95377 273 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 NPTX2P47972 431 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 SARSP49591 514 aaKnown RBP13.08□□□□□ -0.32
HPS4-214ENST00000485842 E2F4Q16254 413 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 CDCA2Q69YH5 1023 aaPredicted RBP13.08□□□□□ -0.32
HPS4-214ENST00000485842 ADALQ6DHV7 355 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 TWF2Q6IBS0 349 aaKnown RBP13.08□□□□□ -0.32
HPS4-214ENST00000485842 DYMQ7RTS9 669 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 RNF169Q8NCN4 708 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 STAMQ92783 540 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 CPB2Q96IY4 423 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 IPO9Q96P70 1041 aaKnown RBP13.08□□□□□ -0.32
HPS4-214ENST00000485842 YME1L1Q96TA2 773 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 KMT5AQ9NQR1 393 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 RGS18Q9NS28 235 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 C1orf112Q9NSG2 853 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 AGPAT5Q9NUQ2 364 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 KCNH3Q9ULD8 1083 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 LRFN2Q9ULH4 789 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 ODF2LQ9ULJ1 636 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 YBX2Q9Y2T7 364 aaKnown RBP13.08□□□□□ -0.32
HPS4-214ENST00000485842 PCDHA11Q9Y5I1 949 aa13.08□□□□□ -0.32
HPS4-214ENST00000485842 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.07□□□□□ -0.32
HPS4-214ENST00000485842 A0A1B0GVL5 298 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 MYMKA6NI61 221 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 C9IYK1 514 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 B4GALT5O43286 388 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 PRKCBP05771 671 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 CA3P07451 260 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 STAG3L1P0CL83 205 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 PLS3P13797 630 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 PFKFB1P16118 471 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 GIT2Q14161 759 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 TMEM132AQ24JP5 1023 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 SLC24A5Q71RS6 500 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 NPAS4Q8IUM7 802 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 FSIP1Q8NA03 581 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 IQUBQ8NA54 791 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 DDX12PQ92771 950 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 TOP1MTQ969P6 601 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 TIFAQ96CG3 184 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 NFKBIZQ9BYH8 718 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 CUEDC2Q9H467 287 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 CHST12Q9NRB3 414 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 PRMT7Q9NVM4 692 aaPredicted RBP13.07□□□□□ -0.32
HPS4-214ENST00000485842 DACT1Q9NYF0 836 aa13.07□□□□□ -0.32
HPS4-214ENST00000485842 LARSQ9P2J5 1176 aaKnown RBP13.07□□□□□ -0.32
HPS4-214ENST00000485842 LCHNA4D1U4 455 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 GOLGA6L4A6NEF3 574 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 SLC16A4O15374 487 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 IDEP14735 1019 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 ARF4P18085 180 aaPredicted RBP13.06□□□□□ -0.32
HPS4-214ENST00000485842 CMA1P23946 247 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 SMTNP53814 917 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 NCBP1Q09161 790 aaKnown RBP13.06□□□□□ -0.32
HPS4-214ENST00000485842 PCBP1Q15365 356 aaKnown RBP eCLIP13.06□□□□□ -0.32
HPS4-214ENST00000485842 MAPK6Q16659 721 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 AMHR2Q16671 573 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 NOTUMQ6P988 496 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 FAM43BQ6ZT52 329 aaPredicted RBP13.06□□□□□ -0.32
HPS4-214ENST00000485842 CDR2LQ86X02 465 aaPredicted RBP13.06□□□□□ -0.32
HPS4-214ENST00000485842 ECHDC2Q86YB7 292 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 MYCT1Q8N699 235 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 MRPS27Q92552 414 aaKnown RBP13.06□□□□□ -0.32
HPS4-214ENST00000485842 RAD9AQ99638 391 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 CCDC113Q9H0I3 377 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 C17orf75Q9HAS0 396 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 PARVGQ9HBI0 331 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 USP20Q9Y2K6 914 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 PCDHB7Q9Y5E2 793 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 PHLPP2Q6ZVD8 1323 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 CNTNAP2Q9UHC6 1331 aa13.06□□□□□ -0.32
HPS4-214ENST00000485842 A0A1W2PQ27 194 aa13.05□□□□□ -0.32
HPS4-214ENST00000485842 A0A1W2PQ64 194 aa13.05□□□□□ -0.32
HPS4-214ENST00000485842 A0A1W2PQD8 194 aa13.05□□□□□ -0.32
HPS4-214ENST00000485842 K7ENM7 598 aa13.05□□□□□ -0.32
HPS4-214ENST00000485842 K7ERI5 159 aa13.05□□□□□ -0.32
HPS4-214ENST00000485842 EDN1P05305 212 aa13.05□□□□□ -0.32
HPS4-214ENST00000485842 AXLP30530 894 aa13.05□□□□□ -0.32
HPS4-214ENST00000485842 HOXA11P31270 313 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms