RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 CUTAO60888 179 aa17.59■□□□□ 0.41
UPF3A-208ENST00000484246 CSDE1O75534 798 aaKnown RBP17.59■□□□□ 0.41
UPF3A-208ENST00000484246 ARHGEF15O94989 841 aa17.59■□□□□ 0.41
UPF3A-208ENST00000484246 FGFR4P22455 802 aa17.59■□□□□ 0.41
UPF3A-208ENST00000484246 AXLP30530 894 aa17.59■□□□□ 0.41
UPF3A-208ENST00000484246 DNM1Q05193 864 aaKnown RBP17.59■□□□□ 0.41
UPF3A-208ENST00000484246 ZRSR1Q15695 479 aaKnown RBP17.59■□□□□ 0.41
UPF3A-208ENST00000484246 AMHR2Q16671 573 aa17.59■□□□□ 0.41
UPF3A-208ENST00000484246 FAM187BQ17R55 369 aa17.59■□□□□ 0.41
UPF3A-208ENST00000484246 Q7L0L9 218 aa17.59■□□□□ 0.41
UPF3A-208ENST00000484246 RAD54LQ92698 747 aa17.59■□□□□ 0.41
UPF3A-208ENST00000484246 PRIMPOLQ96LW4 560 aa17.59■□□□□ 0.41
UPF3A-208ENST00000484246 YME1L1Q96TA2 773 aa17.59■□□□□ 0.41
UPF3A-208ENST00000484246 CCDC39Q9UFE4 941 aa17.59■□□□□ 0.41
UPF3A-208ENST00000484246 RCOR1Q9UKL0 485 aa17.59■□□□□ 0.41
UPF3A-208ENST00000484246 EVPLQ92817 2033 aa17.59■□□□□ 0.41
UPF3A-208ENST00000484246 PHLPP2Q6ZVD8 1323 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 LINC01553A4QN01 128 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 TSPAN1O60635 241 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 ZNF623O75123 536 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 HOXA11P31270 313 aaPredicted RBP17.58■□□□□ 0.4
UPF3A-208ENST00000484246 RAB27AP51159 221 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 NUCB2P80303 420 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 AXDND1Q5T1B0 1012 aaPredicted RBP17.58■□□□□ 0.4
UPF3A-208ENST00000484246 CCDC73Q6ZRK6 1079 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 MAEAQ7L5Y9 396 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 ZNF598Q86UK7 904 aaKnown RBP17.58■□□□□ 0.4
UPF3A-208ENST00000484246 ECHDC2Q86YB7 292 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 ZBTB8OSQ8IWT0 167 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 CMTR2Q8IYT2 770 aaKnown RBP17.58■□□□□ 0.4
UPF3A-208ENST00000484246 GUCD1Q96NT3 240 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 CCDC113Q9H0I3 377 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 FZD8Q9H461 694 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 ODF2LQ9ULJ1 636 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 PIN4Q9Y237 131 aaKnown RBP17.58■□□□□ 0.4
UPF3A-208ENST00000484246 SSUH2Q9Y2M2 353 aa17.58■□□□□ 0.4
UPF3A-208ENST00000484246 LRRIQ4A6NIV6 560 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 HOXA2O43364 376 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 HIP1RO75146 1068 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 ERLIN2O94905 339 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 UPP2O95045 317 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 SKIP12755 728 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 ATF7P17544 494 aaPredicted RBP17.57■□□□□ 0.4
UPF3A-208ENST00000484246 EFNA5P52803 228 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 ERVK-21P61565 698 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 KRT85P78386 507 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 NAALADL2Q58DX5 795 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 ARSHQ5FYA8 562 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 SPECC1Q5M775 1068 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 FAM117BQ6P1L5 589 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 SLC17A8Q8NDX2 589 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 RASSF8Q8NHQ8 419 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 SPIRE2Q8WWL2 714 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 LARP4BQ92615 738 aaKnown RBP17.57■□□□□ 0.4
UPF3A-208ENST00000484246 IFT74Q96LB3 600 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 SAMD11Q96NU1 681 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 PLIN2Q99541 437 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 PRMT7Q9NVM4 692 aaPredicted RBP17.57■□□□□ 0.4
UPF3A-208ENST00000484246 KCNG1Q9UIX4 513 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 PCDHB7Q9Y5E2 793 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 TTC3P53804 2025 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 LOXHD1Q8IVV2 1947 aa17.57■□□□□ 0.4
UPF3A-208ENST00000484246 CNTNAP2Q9UHC6 1331 aa17.56■□□□□ 0.4
UPF3A-208ENST00000484246 INO80B-WBP1J3KQ70 363 aa17.56■□□□□ 0.4
UPF3A-208ENST00000484246 EOMESO95936 686 aa17.56■□□□□ 0.4
UPF3A-208ENST00000484246 LINC00271P0C7V0 271 aa17.56■□□□□ 0.4
UPF3A-208ENST00000484246 ZNF131P52739 623 aa17.56■□□□□ 0.4
UPF3A-208ENST00000484246 DMP1Q13316 513 aaPredicted RBP17.56■□□□□ 0.4
UPF3A-208ENST00000484246 NOTUMQ6P988 496 aa17.56■□□□□ 0.4
UPF3A-208ENST00000484246 DEPTORQ8TB45 409 aa17.56■□□□□ 0.4
UPF3A-208ENST00000484246 CLP1Q92989 425 aaKnown RBP17.56■□□□□ 0.4
UPF3A-208ENST00000484246 NTPCRQ9BSD7 190 aaKnown RBP17.56■□□□□ 0.4
UPF3A-208ENST00000484246 FAM105AQ9NUU6 356 aa17.56■□□□□ 0.4
UPF3A-208ENST00000484246 RNF19AQ9NV58 838 aa17.56■□□□□ 0.4
UPF3A-208ENST00000484246 ARHGAP28Q9P2N2 729 aa17.56■□□□□ 0.4
UPF3A-208ENST00000484246 LRFN2Q9ULH4 789 aa17.56■□□□□ 0.4
UPF3A-208ENST00000484246 MYH15Q9Y2K3 1946 aa17.56■□□□□ 0.4
UPF3A-208ENST00000484246 LAMA2P24043 3122 aaKnown RBP17.56■□□□□ 0.4
UPF3A-208ENST00000484246 SSBP05455 408 aaKnown RBP eCLIP17.55■□□□□ 0.4
UPF3A-208ENST00000484246 SCP2P22307 547 aa17.55■□□□□ 0.4
UPF3A-208ENST00000484246 NPTX2P47972 431 aa17.55■□□□□ 0.4
UPF3A-208ENST00000484246 GRIN2CQ14957 1233 aa17.55■□□□□ 0.4
UPF3A-208ENST00000484246 MAPK6Q16659 721 aa17.55■□□□□ 0.4
UPF3A-208ENST00000484246 UBXN11Q5T124 520 aa17.55■□□□□ 0.4
UPF3A-208ENST00000484246 RRAGBQ5VZM2 374 aa17.55■□□□□ 0.4
UPF3A-208ENST00000484246 TWF2Q6IBS0 349 aaKnown RBP17.55■□□□□ 0.4
UPF3A-208ENST00000484246 SHC4Q6S5L8 630 aa17.55■□□□□ 0.4
UPF3A-208ENST00000484246 GPBP1Q86WP2 473 aa17.55■□□□□ 0.4
UPF3A-208ENST00000484246 TGS1Q96RS0 853 aaKnown RBP17.55■□□□□ 0.4
UPF3A-208ENST00000484246 CIZ1Q9ULV3 898 aaPredicted RBP17.55■□□□□ 0.4
UPF3A-208ENST00000484246 RBM19Q9Y4C8 960 aaKnown RBP17.55■□□□□ 0.4
UPF3A-208ENST00000484246 ZMYM2Q9UBW7 1377 aa17.54■□□□□ 0.4
UPF3A-208ENST00000484246 A0A087X0B3 334 aa17.54■□□□□ 0.4
UPF3A-208ENST00000484246 PLS3P13797 630 aa17.54■□□□□ 0.4
UPF3A-208ENST00000484246 ARF4P18085 180 aaPredicted RBP17.54■□□□□ 0.4
UPF3A-208ENST00000484246 NCBP1Q09161 790 aaKnown RBP17.54■□□□□ 0.4
UPF3A-208ENST00000484246 MCM6Q14566 821 aa17.54■□□□□ 0.4
UPF3A-208ENST00000484246 FOXD4L6Q3SYB3 417 aaPredicted RBP17.54■□□□□ 0.4
UPF3A-208ENST00000484246 FOXD4L3Q6VB84 417 aaPredicted RBP17.54■□□□□ 0.4
UPF3A-208ENST00000484246 MRPL10Q7Z7H8 261 aaKnown RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms