RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 USP28Q96RU2 1077 aa17.28■□□□□ 0.36
HMGA1-206ENST00000478214 TRAIPQ9BWF2 469 aa17.28■□□□□ 0.36
HMGA1-206ENST00000478214 TSPAN1O60635 241 aa17.27■□□□□ 0.36
HMGA1-206ENST00000478214 LONP1P36776 959 aaKnown RBP17.27■□□□□ 0.36
HMGA1-206ENST00000478214 UBA7P41226 1012 aa17.27■□□□□ 0.36
HMGA1-206ENST00000478214 GPM6BQ13491 265 aa17.27■□□□□ 0.36
HMGA1-206ENST00000478214 AMHR2Q16671 573 aa17.27■□□□□ 0.36
HMGA1-206ENST00000478214 TMEM119Q4V9L6 283 aa17.27■□□□□ 0.36
HMGA1-206ENST00000478214 CDK5RAP3Q96JB5 506 aa17.27■□□□□ 0.36
HMGA1-206ENST00000478214 RUSC1Q9BVN2 902 aa17.27■□□□□ 0.36
HMGA1-206ENST00000478214 NFKBIZQ9BYH8 718 aa17.27■□□□□ 0.36
HMGA1-206ENST00000478214 TMEM117Q9H0C3 514 aa17.27■□□□□ 0.36
HMGA1-206ENST00000478214 HCSTQ9UBK5 93 aa17.27■□□□□ 0.36
HMGA1-206ENST00000478214 RWDD3Q9Y3V2 267 aa17.27■□□□□ 0.36
HMGA1-206ENST00000478214 PRRC2BQ5JSZ5 2229 aaKnown RBP17.27■□□□□ 0.35
HMGA1-206ENST00000478214 C5orf67F2Z3F1 127 aa17.26■□□□□ 0.35
HMGA1-206ENST00000478214 H3BNC9 293 aa17.26■□□□□ 0.35
HMGA1-206ENST00000478214 ERLIN2O94905 339 aa17.26■□□□□ 0.35
HMGA1-206ENST00000478214 EOMESO95936 686 aa17.26■□□□□ 0.35
HMGA1-206ENST00000478214 SSBP05455 408 aaKnown RBP eCLIP17.26■□□□□ 0.35
HMGA1-206ENST00000478214 LONRF3Q496Y0 759 aa17.26■□□□□ 0.35
HMGA1-206ENST00000478214 CLLU1OSQ5K130 101 aa17.26■□□□□ 0.35
HMGA1-206ENST00000478214 UBXN11Q5T124 520 aa17.26■□□□□ 0.35
HMGA1-206ENST00000478214 RINT1Q6NUQ1 792 aa17.26■□□□□ 0.35
HMGA1-206ENST00000478214 LPPQ93052 612 aa17.26■□□□□ 0.35
HMGA1-206ENST00000478214 CPB2Q96IY4 423 aa17.26■□□□□ 0.35
HMGA1-206ENST00000478214 CASD1Q96PB1 797 aa17.26■□□□□ 0.35
HMGA1-206ENST00000478214 NT5C3AQ9H0P0 336 aa17.26■□□□□ 0.35
HMGA1-206ENST00000478214 FAM105AQ9NUU6 356 aa17.26■□□□□ 0.35
HMGA1-206ENST00000478214 FBXO2Q9UK22 296 aaPredicted RBP17.26■□□□□ 0.35
HMGA1-206ENST00000478214 B4GALT5O43286 388 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 HOXA2O43364 376 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 RB1P06400 928 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 RAB27AP51159 221 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 PCBP1Q15365 356 aaKnown RBP eCLIP17.25■□□□□ 0.356e-54■■■■□ 20.5
HMGA1-206ENST00000478214 SPECC1Q5M775 1068 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 CDCA2Q69YH5 1023 aaPredicted RBP17.25■□□□□ 0.35
HMGA1-206ENST00000478214 C1orf186Q6ZWK4 172 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 USP49Q70CQ1 688 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 ABI1Q8IZP0 508 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 DAW1Q8N136 415 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 KCTD17Q8N5Z5 321 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 HELQQ8TDG4 1101 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 LRRC15Q8TF66 581 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 KIFAP3Q92845 792 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 CLIC6Q96NY7 704 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 CSRNP2Q9H175 543 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 TYW1Q9NV66 732 aaKnown RBP17.25■□□□□ 0.35
HMGA1-206ENST00000478214 PCDHB2Q9Y5E7 798 aa17.25■□□□□ 0.35
HMGA1-206ENST00000478214 SRPRBQ9Y5M8 271 aaKnown RBP17.25■□□□□ 0.35
HMGA1-206ENST00000478214 SPTBN5Q9NRC6 3674 aaKnown RBP17.25■□□□□ 0.35
HMGA1-206ENST00000478214 MEIS3P2A8K0S8 358 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 SLC26A4O43511 780 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 ZNF623O75123 536 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 HIP1RO75146 1068 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 PLA2G4BP0C869 781 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 ZSCAN22P10073 491 aaPredicted RBP17.24■□□□□ 0.35
HMGA1-206ENST00000478214 SKIP12755 728 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 ARF4P18085 180 aaPredicted RBP17.24■□□□□ 0.35
HMGA1-206ENST00000478214 AXLP30530 894 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 NAMPTP43490 491 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 SLC12A3P55017 1021 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 NCBP1Q09161 790 aaKnown RBP17.24■□□□□ 0.35
HMGA1-206ENST00000478214 PKP1Q13835 747 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 SLC39A14Q15043 492 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 KARSQ15046 597 aaKnown RBP17.24■□□□□ 0.35
HMGA1-206ENST00000478214 SPOUT1Q5T280 376 aaKnown RBP17.24■□□□□ 0.35
HMGA1-206ENST00000478214 NOTUMQ6P988 496 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 LRRC55Q6ZSA7 311 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 ZBTB8OSQ8IWT0 167 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 SYT2Q8N9I0 419 aaPredicted RBP17.24■□□□□ 0.35
HMGA1-206ENST00000478214 DEPTORQ8TB45 409 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 CALML4Q96GE6 196 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 EPSTI1Q96J88 318 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 IFT74Q96LB3 600 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 C11orf84Q9BUA3 381 aaPredicted RBP17.24■□□□□ 0.35
HMGA1-206ENST00000478214 KIFC3Q9BVG8 833 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 PLVAPQ9BX97 442 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 PRDM6Q9NQX0 595 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 LMCD1Q9NZU5 365 aa17.24■□□□□ 0.35
HMGA1-206ENST00000478214 TFIP11Q9UBB9 837 aaKnown RBP17.24■□□□□ 0.35
HMGA1-206ENST00000478214 COL4A4P53420 1690 aaPredicted RBP17.23■□□□□ 0.35
HMGA1-206ENST00000478214 GRM6O15303 877 aa17.23■□□□□ 0.35
HMGA1-206ENST00000478214 PDIA4P13667 645 aaKnown RBP17.23■□□□□ 0.35
HMGA1-206ENST00000478214 PLCG1P19174 1290 aa17.23■□□□□ 0.35
HMGA1-206ENST00000478214 NASPP49321 788 aaPredicted RBP17.23■□□□□ 0.35
HMGA1-206ENST00000478214 RAD51AP2Q09MP3 1159 aa17.23■□□□□ 0.35
HMGA1-206ENST00000478214 MAPK7Q13164 816 aa17.23■□□□□ 0.35
HMGA1-206ENST00000478214 PPP2R5AQ15172 486 aa17.23■□□□□ 0.35
HMGA1-206ENST00000478214 FOXD4L6Q3SYB3 417 aaPredicted RBP17.23■□□□□ 0.35
HMGA1-206ENST00000478214 FOXD4L3Q6VB84 417 aaPredicted RBP17.23■□□□□ 0.35
HMGA1-206ENST00000478214 MRPL10Q7Z7H8 261 aaKnown RBP17.23■□□□□ 0.35
HMGA1-206ENST00000478214 CDR2LQ86X02 465 aaPredicted RBP17.23■□□□□ 0.35
HMGA1-206ENST00000478214 SLC17A8Q8NDX2 589 aa17.23■□□□□ 0.35
HMGA1-206ENST00000478214 RASSF8Q8NHQ8 419 aa17.23■□□□□ 0.35
HMGA1-206ENST00000478214 EIF2AQ9BY44 585 aaKnown RBP17.23■□□□□ 0.35
HMGA1-206ENST00000478214 C2orf40Q9H1Z8 148 aa17.23■□□□□ 0.35
HMGA1-206ENST00000478214 FZD8Q9H461 694 aa17.23■□□□□ 0.35
HMGA1-206ENST00000478214 CWH43Q9H720 699 aa17.23■□□□□ 0.35
HMGA1-206ENST00000478214 ALG13Q9NP73 1137 aaKnown RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms