RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 OR52Z1P0C646 297 aa12.81□□□□□ -0.36
HLA-DOB-208ENST00000475235 IBSPP21815 317 aaPredicted RBP12.81□□□□□ -0.36
HLA-DOB-208ENST00000475235 U2AF2P26368 475 aaKnown RBP eCLIP12.81□□□□□ -0.36
HLA-DOB-208ENST00000475235 TTC38Q5R3I4 469 aa12.81□□□□□ -0.36
HLA-DOB-208ENST00000475235 ERMNQ8TAM6 284 aa12.81□□□□□ -0.36
HLA-DOB-208ENST00000475235 HLA-CQ95604 372 aa12.81□□□□□ -0.36
HLA-DOB-208ENST00000475235 ZNF668Q96K58 619 aaPredicted RBP12.81□□□□□ -0.36
HLA-DOB-208ENST00000475235 NLRP4Q96MN2 994 aa12.81□□□□□ -0.36
HLA-DOB-208ENST00000475235 FDXACB1Q9BRP7 624 aaPredicted RBP12.81□□□□□ -0.36
HLA-DOB-208ENST00000475235 TMEM60Q9H2L4 133 aa12.81□□□□□ -0.36
HLA-DOB-208ENST00000475235 AAASQ9NRG9 546 aa12.81□□□□□ -0.36
HLA-DOB-208ENST00000475235 COL4A3BPQ9Y5P4 624 aa12.81□□□□□ -0.36
HLA-DOB-208ENST00000475235 MRPL42Q9Y6G3 142 aaKnown RBP12.81□□□□□ -0.36
HLA-DOB-208ENST00000475235 DGAT1O75907 488 aa12.8□□□□□ -0.36
HLA-DOB-208ENST00000475235 XRCC6P12956 609 aaKnown RBP eCLIP12.8□□□□□ -0.36
HLA-DOB-208ENST00000475235 EMC2Q15006 297 aa12.8□□□□□ -0.36
HLA-DOB-208ENST00000475235 ZNF174Q15697 407 aa12.8□□□□□ -0.36
HLA-DOB-208ENST00000475235 UVSSAQ2YD98 709 aa12.8□□□□□ -0.36
HLA-DOB-208ENST00000475235 PAN2Q504Q3 1202 aaKnown RBP12.8□□□□□ -0.36
HLA-DOB-208ENST00000475235 RSPH1Q8WYR4 309 aa12.8□□□□□ -0.36
HLA-DOB-208ENST00000475235 MTRQ99707 1265 aa12.8□□□□□ -0.36
HLA-DOB-208ENST00000475235 A0A0U1RQF3 1178 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 POTEMA6NI47 508 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 TBKBP1A7MCY6 615 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 ESPNB1AK53 854 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 EOMESO95936 686 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 CCDC172P0C7W6 258 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 SKIP12755 728 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 TECP42680 631 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 CSPP1Q1MSJ5 1256 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 FAM102BQ5T8I3 360 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 SRGAP1Q7Z6B7 1085 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 ABI1Q8IZP0 508 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 PRPF31Q8WWY3 499 aaKnown RBP12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 TMEM143Q96AN5 459 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 TRAIPQ9BWF2 469 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 TMEM117Q9H0C3 514 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 NSUN3Q9H649 340 aaKnown RBP12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 TUFT1Q9NNX1 390 aa12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.79□□□□□ -0.36
HLA-DOB-208ENST00000475235 TPD52L2O43399 206 aaKnown RBP12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 FGFR4P22455 802 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 RARRES1P49788 294 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 GATMP50440 423 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 LAMTOR4Q0VGL1 99 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 MXD4Q14582 209 aaPredicted RBP12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 PCBP1Q15365 356 aaKnown RBP eCLIP12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 SPOUT1Q5T280 376 aaKnown RBP12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 HAUS3Q68CZ6 603 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 CATSPER4Q7RTX7 472 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 FERMT3Q86UX7 667 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 ECHDC2Q86YB7 292 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 KSR1Q8IVT5 923 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 RNF217Q8TC41 542 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 POLR3CQ9BUI4 534 aaPredicted RBP12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 RAB34Q9BZG1 259 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 IFT122Q9HBG6 1241 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 PLAGL2Q9UPG8 496 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 PIN4Q9Y237 131 aaKnown RBP12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 PCDHB12Q9Y5F1 795 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 STK24Q9Y6E0 443 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 COL4A4P53420 1690 aaPredicted RBP12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 PRUNE2Q8WUY3 3088 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 H3BQV1 296 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 LAD1O00515 517 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 ZBTB39O15060 712 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 GRM6O15303 877 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 NCK2O43639 380 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 CSDE1O75534 798 aaKnown RBP12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 CD2BP2O95400 341 aaKnown RBP12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 BRD1O95696 1058 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 SRGAP2CP0DJJ0 459 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 FGFR1P11362 822 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 LAG3P18627 525 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 MUTP22033 750 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 RPA1P27694 616 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 GJB2P29033 226 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 PHKA2P46019 1235 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 RAB27AP51159 221 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 POU5F1BQ06416 359 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 TFDP1Q14186 410 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 ZRSR2Q15696 482 aaKnown RBP12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 TWF2Q6IBS0 349 aaKnown RBP12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 CATSPER3Q86XQ3 398 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 LRRC43Q8N309 656 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 RNF149Q8NC42 400 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 PPP2R3CQ969Q6 453 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 NACC1Q96RE7 527 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 BMP2KQ9NSY1 1161 aaPredicted RBP12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 SMC3Q9UQE7 1217 aa12.78□□□□□ -0.36
HLA-DOB-208ENST00000475235 TRANK1O15050 2925 aa12.77□□□□□ -0.36
HLA-DOB-208ENST00000475235 A0A0C4DFX4 3053 aa12.77□□□□□ -0.37
HLA-DOB-208ENST00000475235 SPATA31C1P0DKV0 1188 aa12.77□□□□□ -0.37
HLA-DOB-208ENST00000475235 LIG1P18858 919 aa12.77□□□□□ -0.37
HLA-DOB-208ENST00000475235 TFF2Q03403 129 aa12.77□□□□□ -0.37
HLA-DOB-208ENST00000475235 UBE3AQ05086 875 aa12.77□□□□□ -0.37
HLA-DOB-208ENST00000475235 RILPL1Q5EBL4 403 aa12.77□□□□□ -0.37
HLA-DOB-208ENST00000475235 MCTP1Q6DN14 999 aa12.77□□□□□ -0.37
HLA-DOB-208ENST00000475235 ZNF598Q86UK7 904 aaKnown RBP12.77□□□□□ -0.37
HLA-DOB-208ENST00000475235 ZNF513Q8N8E2 541 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms