RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 ALDH7A1P49419 539 aaKnown RBP22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 CYP4A11Q02928 519 aa22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 CTTNQ14247 550 aaKnown RBP22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 BMS1Q14692 1282 aaKnown RBP22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 EMC2Q15006 297 aa22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 SAFBQ15424 915 aaKnown RBP eCLIP22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 XKR9Q5GH70 373 aa22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 GLB1LQ6UWU2 654 aa22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 TPH2Q8IWU9 490 aa22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 ZNF579Q8NAF0 562 aaKnown RBP22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 TMEM143Q96AN5 459 aa22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 PGBD4Q96DM1 585 aa22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 AGPAT5Q9NUQ2 364 aa22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 FAM105AQ9NUU6 356 aa22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 LIMCH1Q9UPQ0 1083 aa22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 ARID2Q68CP9 1835 aa22.73■■□□□ 1.23
PDLIM4-206ENST00000474421 PER2O15055 1255 aa22.72■■□□□ 1.23
PDLIM4-206ENST00000474421 DCXO43602 365 aa22.72■■□□□ 1.23
PDLIM4-206ENST00000474421 SLITRK3O94933 977 aa22.72■■□□□ 1.23
PDLIM4-206ENST00000474421 LYPLA2O95372 231 aa22.72■■□□□ 1.23
PDLIM4-206ENST00000474421 GLP2RO95838 553 aa22.72■■□□□ 1.23
PDLIM4-206ENST00000474421 SRGAP2CP0DJJ0 459 aa22.72■■□□□ 1.23
PDLIM4-206ENST00000474421 LAMTOR4Q0VGL1 99 aa22.72■■□□□ 1.23
PDLIM4-206ENST00000474421 PLPP4Q5VZY2 271 aa22.72■■□□□ 1.23
PDLIM4-206ENST00000474421 SLC39A11Q8N1S5 342 aa22.72■■□□□ 1.23
PDLIM4-206ENST00000474421 MTRQ99707 1265 aa22.72■■□□□ 1.23
PDLIM4-206ENST00000474421 EIF2AK1Q9BQI3 630 aaKnown RBP22.72■■□□□ 1.23
PDLIM4-206ENST00000474421 TTC12Q9H892 705 aaPredicted RBP22.72■■□□□ 1.23
PDLIM4-206ENST00000474421 SEC24BO95487 1268 aa22.71■■□□□ 1.23
PDLIM4-206ENST00000474421 MXD4Q14582 209 aaPredicted RBP22.71■■□□□ 1.23
PDLIM4-206ENST00000474421 PCBP1Q15365 356 aaKnown RBP eCLIP22.71■■□□□ 1.23
PDLIM4-206ENST00000474421 TMC7Q7Z402 723 aa22.71■■□□□ 1.23
PDLIM4-206ENST00000474421 FERMT3Q86UX7 667 aa22.71■■□□□ 1.23
PDLIM4-206ENST00000474421 HSD17B14Q9BPX1 270 aa22.71■■□□□ 1.23
PDLIM4-206ENST00000474421 LLPHQ9BRT6 129 aaKnown RBP22.71■■□□□ 1.23
PDLIM4-206ENST00000474421 ANKEF1Q9NU02 776 aa22.71■■□□□ 1.23
PDLIM4-206ENST00000474421 BARX2Q9UMQ3 279 aaPredicted RBP22.71■■□□□ 1.23
PDLIM4-206ENST00000474421 HCN4Q9Y3Q4 1203 aa22.71■■□□□ 1.23
PDLIM4-206ENST00000474421 PBX3P40426 434 aa22.7■■□□□ 1.22
PDLIM4-206ENST00000474421 FOSBP53539 338 aa22.7■■□□□ 1.22
PDLIM4-206ENST00000474421 BCAR1P56945 870 aa22.7■■□□□ 1.22
PDLIM4-206ENST00000474421 SMC1AQ14683 1233 aaKnown RBP22.7■■□□□ 1.22
PDLIM4-206ENST00000474421 TMEM184AQ6ZMB5 413 aa22.7■■□□□ 1.22
PDLIM4-206ENST00000474421 RNF149Q8NC42 400 aa22.7■■□□□ 1.22
PDLIM4-206ENST00000474421 TMEM169Q96HH4 297 aa22.7■■□□□ 1.22
PDLIM4-206ENST00000474421 CCDC43Q96MW1 224 aaKnown RBP22.7■■□□□ 1.22
PDLIM4-206ENST00000474421 C11orf16Q9NQ32 467 aa22.7■■□□□ 1.22
PDLIM4-206ENST00000474421 PCDHB2Q9Y5E7 798 aa22.7■■□□□ 1.22
PDLIM4-206ENST00000474421 DGAT1O75907 488 aa22.69■■□□□ 1.22
PDLIM4-206ENST00000474421 TXKP42681 527 aa22.69■■□□□ 1.22
PDLIM4-206ENST00000474421 TFDP1Q14186 410 aa22.69■■□□□ 1.22
PDLIM4-206ENST00000474421 NOMO2Q5JPE7 1267 aa22.69■■□□□ 1.22
PDLIM4-206ENST00000474421 LPPQ93052 612 aa22.69■■□□□ 1.22
PDLIM4-206ENST00000474421 MTMR9Q96QG7 549 aa22.69■■□□□ 1.22
PDLIM4-206ENST00000474421 BMP2KQ9NSY1 1161 aaPredicted RBP22.69■■□□□ 1.22
PDLIM4-206ENST00000474421 FAM86C2PA6NEL3 165 aa22.68■■□□□ 1.22
PDLIM4-206ENST00000474421 PRR33A8MZF0 331 aa22.68■■□□□ 1.22
PDLIM4-206ENST00000474421 ZC3H11AO75152 810 aaKnown RBP eCLIP22.68■■□□□ 1.22
PDLIM4-206ENST00000474421 RNASELQ05823 741 aaKnown RBP22.68■■□□□ 1.22
PDLIM4-206ENST00000474421 POU5F1BQ06416 359 aa22.68■■□□□ 1.22
PDLIM4-206ENST00000474421 NCBP1Q09161 790 aaKnown RBP22.68■■□□□ 1.22
PDLIM4-206ENST00000474421 URGCPQ8TCY9 931 aa22.68■■□□□ 1.22
PDLIM4-206ENST00000474421 C8orf76Q96K31 380 aa22.68■■□□□ 1.22
PDLIM4-206ENST00000474421 ZSCAN31Q96LW9 406 aaPredicted RBP22.68■■□□□ 1.22
PDLIM4-206ENST00000474421 TBC1D13Q9NVG8 400 aa22.68■■□□□ 1.22
PDLIM4-206ENST00000474421 RAPGEFL1Q9UHV5 662 aa22.68■■□□□ 1.22
PDLIM4-206ENST00000474421 USP15Q9Y4E8 981 aaPredicted RBP22.68■■□□□ 1.22
PDLIM4-206ENST00000474421 ARIH1Q9Y4X5 557 aaPredicted RBP22.68■■□□□ 1.22
PDLIM4-206ENST00000474421 CNTNAP2Q9UHC6 1331 aa22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 HIDE1A8MVS5 230 aa22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 ZBTB39O15060 712 aa22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 OFD1O75665 1012 aa22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 ERLIN2O94905 339 aa22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 XRCC6P12956 609 aaKnown RBP eCLIP22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 AXLP30530 894 aa22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 ST3GAL1Q11201 340 aa22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 MRPL10Q7Z7H8 261 aaKnown RBP22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 MRPL43Q8N983 215 aaKnown RBP22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 CNNM3Q8NE01 707 aa22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 VN1R2Q8NFZ6 395 aa22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 MINDY3Q9H8M7 445 aa22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 KANSL3Q9P2N6 904 aa22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 STK39Q9UEW8 545 aa22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 INPP5FQ9Y2H2 1132 aa22.67■■□□□ 1.22
PDLIM4-206ENST00000474421 HOXB8P17481 243 aaPredicted RBP22.66■■□□□ 1.22
PDLIM4-206ENST00000474421 HOXA11P31270 313 aaPredicted RBP22.66■■□□□ 1.22
PDLIM4-206ENST00000474421 PTENP60484 403 aa22.66■■□□□ 1.22
PDLIM4-206ENST00000474421 HMGN5P82970 282 aaKnown RBP22.66■■□□□ 1.22
PDLIM4-206ENST00000474421 ORC2Q13416 577 aaPredicted RBP22.66■■□□□ 1.22
PDLIM4-206ENST00000474421 KCNC3Q14003 757 aa22.66■■□□□ 1.22
PDLIM4-206ENST00000474421 LONRF3Q496Y0 759 aa22.66■■□□□ 1.22
PDLIM4-206ENST00000474421 CCDC83Q8IWF9 413 aa22.66■■□□□ 1.22
PDLIM4-206ENST00000474421 CCDC51Q96ER9 411 aa22.66■■□□□ 1.22
PDLIM4-206ENST00000474421 UBN1Q9NPG3 1134 aa22.66■■□□□ 1.22
PDLIM4-206ENST00000474421 XPNPEP1Q9NQW7 623 aa22.66■■□□□ 1.22
PDLIM4-206ENST00000474421 SH2B1Q9NRF2 756 aaPredicted RBP22.66■■□□□ 1.22
PDLIM4-206ENST00000474421 MCM7P33993 719 aa22.65■■□□□ 1.22
PDLIM4-206ENST00000474421 TECP42680 631 aa22.65■■□□□ 1.22
PDLIM4-206ENST00000474421 RARRES1P49788 294 aa22.65■■□□□ 1.22
PDLIM4-206ENST00000474421 GIT2Q14161 759 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms