RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 TTC38Q5R3I4 469 aa5.32□□□□□ -1.56
CCDC88A-212ENST00000474059 ADGRG3Q86Y34 549 aa5.32□□□□□ -1.56
CCDC88A-212ENST00000474059 LILRA3Q8N6C8 439 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-212ENST00000474059 LSM14BQ9BX40 385 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-212ENST00000474059 MRPL4Q9BYD3 311 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-212ENST00000474059 RIOX1Q9H6W3 641 aa5.32□□□□□ -1.56
CCDC88A-212ENST00000474059 A0A0A6YYJ9 748 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 TRIM24O15164 1050 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 B3GALT2O43825 422 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 MFAP3LO75121 409 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 IPO13O94829 963 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 ZEB1P37275 1124 aaPredicted RBP5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 PTPAQ15257 358 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 ZC3H12BQ5HYM0 836 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 PRAMEF9Q5VWM5 478 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 UNQ6494/PRO21346Q6UXR6 183 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 APBB1IPQ7Z5R6 666 aaPredicted RBP5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 SYNE4Q8N205 404 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 PIK3C3Q8NEB9 887 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 OR52N2Q8NGI0 321 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 PPP1R14CQ8TAE6 165 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 E2F7Q96AV8 911 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 C14orf93Q9H972 538 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 SYBUQ9NX95 663 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 ING3Q9NXR8 418 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 SNTG2Q9NY99 539 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 SIRPGQ9P1W8 387 aa5.31□□□□□ -1.56
CCDC88A-212ENST00000474059 KIAA0355O15063 1070 aa5.3□□□□□ -1.56
CCDC88A-212ENST00000474059 ZNF185O15231 689 aa5.3□□□□□ -1.56
CCDC88A-212ENST00000474059 GAAP10253 952 aa5.3□□□□□ -1.56
CCDC88A-212ENST00000474059 EPHA7Q15375 998 aa5.3□□□□□ -1.56
CCDC88A-212ENST00000474059 ZKSCAN2Q63HK3 967 aa5.3□□□□□ -1.56
CCDC88A-212ENST00000474059 KRT40Q6A162 431 aa5.3□□□□□ -1.56
CCDC88A-212ENST00000474059 CHST14Q8NCH0 376 aa5.3□□□□□ -1.56
CCDC88A-212ENST00000474059 MYEOVQ96EZ4 313 aa5.3□□□□□ -1.56
CCDC88A-212ENST00000474059 CLUHP3Q96NS8 147 aa5.3□□□□□ -1.56
CCDC88A-212ENST00000474059 DEPDC7Q96QD5 511 aa5.3□□□□□ -1.56
CCDC88A-212ENST00000474059 KCNH6Q9H252 994 aa5.3□□□□□ -1.56
CCDC88A-212ENST00000474059 NCOA5Q9HCD5 579 aaKnown RBP5.3□□□□□ -1.56
CCDC88A-212ENST00000474059 NCDNQ9UBB6 729 aa5.3□□□□□ -1.56
CCDC88A-212ENST00000474059 TMEM200CA6NKL6 621 aa5.29□□□□□ -1.56
CCDC88A-212ENST00000474059 INO80B-WBP1J3KQ70 363 aa5.29□□□□□ -1.56
CCDC88A-212ENST00000474059 HOXA3O43365 443 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-212ENST00000474059 SCAF4O95104 1147 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-212ENST00000474059 ZCCHC8Q6NZY4 707 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-212ENST00000474059 KIAA1958Q8N8K9 716 aa5.29□□□□□ -1.56
CCDC88A-212ENST00000474059 ARL8AQ96BM9 186 aa5.29□□□□□ -1.56
CCDC88A-212ENST00000474059 INO80BQ9C086 356 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-212ENST00000474059 MTG2Q9H4K7 406 aa5.29□□□□□ -1.56
CCDC88A-212ENST00000474059 ACSS2Q9NR19 701 aa5.29□□□□□ -1.56
CCDC88A-212ENST00000474059 CHST2Q9Y4C5 530 aa5.29□□□□□ -1.56
CCDC88A-212ENST00000474059 OPHN1O60890 802 aa5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 GNAT2P19087 354 aa5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 APOBEC3AP31941 199 aaPredicted RBP5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 ATXN1P54253 815 aaKnown RBP5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 NPEPPSP55786 919 aa5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 KRTAP10-9P60411 292 aa5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 ARHGAP44Q17R89 818 aa5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 TIGD2Q4W5G0 525 aa5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 SYCE2Q6PIF2 218 aa5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 FAM98AQ8NCA5 519 aaKnown RBP5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 TUBGCP5Q96RT8 1024 aa5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 DNAJC7Q99615 494 aa5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 TEX101Q9BY14 249 aa5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 OSBPL6Q9BZF3 934 aa5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 SERHL2Q9H4I8 314 aa5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 ANKFY1Q9P2R3 1169 aa5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 EPN1Q9Y6I3 576 aaPredicted RBP5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 COX11Q9Y6N1 276 aa5.28□□□□□ -1.56
CCDC88A-212ENST00000474059 PTPDC1A2A3K4 754 aa5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 DNAJC8O75937 253 aaPredicted RBP5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 BCAR1P56945 870 aa5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 ZNF460Q14592 562 aa5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 VPS72Q15906 364 aa5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 METTL24Q5JXM2 366 aa5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 BTNL9Q6UXG8 535 aa5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 GPRIN1Q7Z2K8 1008 aa5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 PDCD2LQ9BRP1 358 aa5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 MYL10Q9BUA6 226 aa5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 SLC46A2Q9BY10 475 aa5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 WDR11Q9BZH6 1224 aa5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 ADARB2Q9NS39 739 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 SAMD15Q9P1V8 674 aa5.27□□□□□ -1.57
CCDC88A-212ENST00000474059 LEFTY2O00292 366 aa5.26□□□□□ -1.57
CCDC88A-212ENST00000474059 RAPGEF3O95398 923 aa5.26□□□□□ -1.57
CCDC88A-212ENST00000474059 CYP17A1P05093 508 aa5.26□□□□□ -1.57
CCDC88A-212ENST00000474059 LAG3P18627 525 aa5.26□□□□□ -1.57
CCDC88A-212ENST00000474059 FOXI1Q12951 378 aa5.26□□□□□ -1.57
CCDC88A-212ENST00000474059 SYT12Q8IV01 421 aa5.26□□□□□ -1.57
CCDC88A-212ENST00000474059 LINC00476Q8WZB0 136 aa5.26□□□□□ -1.57
CCDC88A-212ENST00000474059 ELF4Q99607 663 aaPredicted RBP5.26□□□□□ -1.57
CCDC88A-212ENST00000474059 NDC1Q9BTX1 674 aa5.26□□□□□ -1.57
CCDC88A-212ENST00000474059 PTCH2Q9Y6C5 1203 aa5.26□□□□□ -1.57
CCDC88A-212ENST00000474059 ELL2O00472 640 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-212ENST00000474059 PRPF6O94906 941 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-212ENST00000474059 SLC9A1P19634 815 aa5.25□□□□□ -1.57
CCDC88A-212ENST00000474059 CASRP41180 1078 aa5.25□□□□□ -1.57
CCDC88A-212ENST00000474059 ADCY2Q08462 1091 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms