RNA–Protein interactions for RNA: ENST00000472892.1

VTI1A-203, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 1 (best)

Gene VTI1A, Length 1,247 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-203ENST00000472892 SPG21Q9NZD8 308 aa17.1■□□□□ 0.33
VTI1A-203ENST00000472892 PCDHA12Q9UN75 941 aa17.1■□□□□ 0.33
VTI1A-203ENST00000472892 ZBTB39O15060 712 aa17.09■□□□□ 0.33
VTI1A-203ENST00000472892 ASAP2O43150 1006 aa17.09■□□□□ 0.33
VTI1A-203ENST00000472892 PBX3P40426 434 aa17.09■□□□□ 0.33
VTI1A-203ENST00000472892 ST3GAL1Q11201 340 aa17.09■□□□□ 0.33
VTI1A-203ENST00000472892 KCNC3Q14003 757 aa17.09■□□□□ 0.33
VTI1A-203ENST00000472892 CTTNQ14247 550 aaKnown RBP17.09■□□□□ 0.33
VTI1A-203ENST00000472892 TWF2Q6IBS0 349 aaKnown RBP17.09■□□□□ 0.33
VTI1A-203ENST00000472892 TMEM184AQ6ZMB5 413 aa17.09■□□□□ 0.33
VTI1A-203ENST00000472892 CATSPER4Q7RTX7 472 aa17.09■□□□□ 0.33
VTI1A-203ENST00000472892 SRGAP1Q7Z6B7 1085 aa17.09■□□□□ 0.33
VTI1A-203ENST00000472892 TPH2Q8IWU9 490 aa17.09■□□□□ 0.33
VTI1A-203ENST00000472892 DIS3L2Q8IYB7 885 aaKnown RBP17.09■□□□□ 0.33
VTI1A-203ENST00000472892 SLC39A11Q8N1S5 342 aa17.09■□□□□ 0.33
VTI1A-203ENST00000472892 VN1R2Q8NFZ6 395 aa17.09■□□□□ 0.33
VTI1A-203ENST00000472892 PSPC1Q8WXF1 523 aaKnown RBP17.09■□□□□ 0.33
VTI1A-203ENST00000472892 POP1Q99575 1024 aaKnown RBP17.09■□□□□ 0.33
VTI1A-203ENST00000472892 TCF25Q9BQ70 676 aa17.09■□□□□ 0.33
VTI1A-203ENST00000472892 FAM105AQ9NUU6 356 aa17.09■□□□□ 0.33
VTI1A-203ENST00000472892 BARX2Q9UMQ3 279 aaPredicted RBP17.09■□□□□ 0.33
VTI1A-203ENST00000472892 PIN4Q9Y237 131 aaKnown RBP17.09■□□□□ 0.33
VTI1A-203ENST00000472892 SSUH2Q9Y2M2 353 aa17.09■□□□□ 0.33
VTI1A-203ENST00000472892 DCXO43602 365 aa17.08■□□□□ 0.32
VTI1A-203ENST00000472892 GAS2O43903 313 aaKnown RBP17.08■□□□□ 0.32
VTI1A-203ENST00000472892 LYPLA2O95372 231 aa17.08■□□□□ 0.32
VTI1A-203ENST00000472892 SRGAP2CP0DJJ0 459 aa17.08■□□□□ 0.32
VTI1A-203ENST00000472892 RAB27AP51159 221 aa17.08■□□□□ 0.32
VTI1A-203ENST00000472892 CYP4A11Q02928 519 aa17.08■□□□□ 0.32
VTI1A-203ENST00000472892 LAMTOR4Q0VGL1 99 aa17.08■□□□□ 0.32
VTI1A-203ENST00000472892 TRIM29Q14134 588 aa17.08■□□□□ 0.32
VTI1A-203ENST00000472892 CALCRLQ16602 461 aa17.08■□□□□ 0.32
VTI1A-203ENST00000472892 XKR9Q5GH70 373 aa17.08■□□□□ 0.32
VTI1A-203ENST00000472892 TCP11Q8WWU5 503 aa17.08■□□□□ 0.32
VTI1A-203ENST00000472892 MTMR9Q96QG7 549 aa17.08■□□□□ 0.32
VTI1A-203ENST00000472892 EIF2AK1Q9BQI3 630 aaKnown RBP17.08■□□□□ 0.32
VTI1A-203ENST00000472892 AGPAT5Q9NUQ2 364 aa17.08■□□□□ 0.32
VTI1A-203ENST00000472892 FAM86C2PA6NEL3 165 aa17.07■□□□□ 0.32
VTI1A-203ENST00000472892 HIDE1A8MVS5 230 aa17.07■□□□□ 0.32
VTI1A-203ENST00000472892 WNT7AO00755 349 aa17.07■□□□□ 0.32
VTI1A-203ENST00000472892 OFD1O75665 1012 aa17.07■□□□□ 0.32
VTI1A-203ENST00000472892 HOXA11P31270 313 aaPredicted RBP17.07■□□□□ 0.32
VTI1A-203ENST00000472892 ALDH7A1P49419 539 aaKnown RBP17.07■□□□□ 0.32
VTI1A-203ENST00000472892 BCAR1P56945 870 aa17.07■□□□□ 0.32
VTI1A-203ENST00000472892 RBM10P98175 930 aaKnown RBP17.07■□□□□ 0.32
VTI1A-203ENST00000472892 EMC2Q15006 297 aa17.07■□□□□ 0.32
VTI1A-203ENST00000472892 PLPP4Q5VZY2 271 aa17.07■□□□□ 0.32
VTI1A-203ENST00000472892 MRPL10Q7Z7H8 261 aaKnown RBP17.07■□□□□ 0.32
VTI1A-203ENST00000472892 FERMT3Q86UX7 667 aa17.07■□□□□ 0.32
VTI1A-203ENST00000472892 MRPL43Q8N983 215 aaKnown RBP17.07■□□□□ 0.32
VTI1A-203ENST00000472892 LPPQ93052 612 aa17.07■□□□□ 0.32
VTI1A-203ENST00000472892 TTC12Q9H892 705 aaPredicted RBP17.07■□□□□ 0.32
VTI1A-203ENST00000472892 MINDY3Q9H8M7 445 aa17.07■□□□□ 0.32
VTI1A-203ENST00000472892 ENTPD7Q9NQZ7 604 aa17.07■□□□□ 0.32
VTI1A-203ENST00000472892 LIMCH1Q9UPQ0 1083 aa17.07■□□□□ 0.32
VTI1A-203ENST00000472892 PCDHB2Q9Y5E7 798 aa17.07■□□□□ 0.32
VTI1A-203ENST00000472892 C5orf42Q9H799 3197 aa17.06■□□□□ 0.32
VTI1A-203ENST00000472892 MEIS3P2A8K0S8 358 aa17.06■□□□□ 0.32
VTI1A-203ENST00000472892 PRR33A8MZF0 331 aa17.06■□□□□ 0.32
VTI1A-203ENST00000472892 NEMFO60524 1076 aa17.06■□□□□ 0.32
VTI1A-203ENST00000472892 TXKP42681 527 aa17.06■□□□□ 0.32
VTI1A-203ENST00000472892 GLB1LQ6UWU2 654 aa17.06■□□□□ 0.32
VTI1A-203ENST00000472892 TMC7Q7Z402 723 aa17.06■□□□□ 0.32
VTI1A-203ENST00000472892 PGBD4Q96DM1 585 aa17.06■□□□□ 0.32
VTI1A-203ENST00000472892 MTRQ99707 1265 aa17.06■□□□□ 0.32
VTI1A-203ENST00000472892 XPNPEP1Q9NQW7 623 aa17.06■□□□□ 0.32
VTI1A-203ENST00000472892 ANKEF1Q9NU02 776 aa17.06■□□□□ 0.32
VTI1A-203ENST00000472892 TBC1D13Q9NVG8 400 aa17.06■□□□□ 0.32
VTI1A-203ENST00000472892 USP15Q9Y4E8 981 aaPredicted RBP17.06■□□□□ 0.32
VTI1A-203ENST00000472892 ARIH1Q9Y4X5 557 aaPredicted RBP17.06■□□□□ 0.32
VTI1A-203ENST00000472892 CARNS1A5YM72 827 aa17.05■□□□□ 0.32
VTI1A-203ENST00000472892 NT5C1B-RDH14C9J2C7 533 aa17.05■□□□□ 0.32
VTI1A-203ENST00000472892 XRCC6P12956 609 aaKnown RBP eCLIP17.05■□□□□ 0.32
VTI1A-203ENST00000472892 FOSBP53539 338 aa17.05■□□□□ 0.32
VTI1A-203ENST00000472892 MXD4Q14582 209 aaPredicted RBP17.05■□□□□ 0.32
VTI1A-203ENST00000472892 PCBP1Q15365 356 aaKnown RBP eCLIP17.05■□□□□ 0.32
VTI1A-203ENST00000472892 LONRF3Q496Y0 759 aa17.05■□□□□ 0.32
VTI1A-203ENST00000472892 NOMO2Q5JPE7 1267 aa17.05■□□□□ 0.32
VTI1A-203ENST00000472892 UBXN11Q5T124 520 aa17.05■□□□□ 0.32
VTI1A-203ENST00000472892 RNF149Q8NC42 400 aa17.05■□□□□ 0.32
VTI1A-203ENST00000472892 SUSD6Q92537 303 aa17.05■□□□□ 0.32
VTI1A-203ENST00000472892 LLPHQ9BRT6 129 aaKnown RBP17.05■□□□□ 0.32
VTI1A-203ENST00000472892 S1PR5Q9H228 398 aa17.05■□□□□ 0.32
VTI1A-203ENST00000472892 NRDE2Q9H7Z3 1164 aa17.05■□□□□ 0.32
VTI1A-203ENST00000472892 BMP2KQ9NSY1 1161 aaPredicted RBP17.05■□□□□ 0.32
VTI1A-203ENST00000472892 C2orf71A6NGG8 1288 aa17.04■□□□□ 0.32
VTI1A-203ENST00000472892 LOC730098B7Z3J9 87 aa17.04■□□□□ 0.32
VTI1A-203ENST00000472892 DGAT1O75907 488 aa17.04■□□□□ 0.32
VTI1A-203ENST00000472892 GALTP07902 379 aa17.04■□□□□ 0.32
VTI1A-203ENST00000472892 SRGAP2BP0DMP2 458 aa17.04■□□□□ 0.32
VTI1A-203ENST00000472892 PTENP60484 403 aa17.04■□□□□ 0.32
VTI1A-203ENST00000472892 POU5F1BQ06416 359 aa17.04■□□□□ 0.32
VTI1A-203ENST00000472892 SMC1AQ14683 1233 aaKnown RBP17.04■□□□□ 0.32
VTI1A-203ENST00000472892 CBX2Q14781 532 aaPredicted RBP17.04■□□□□ 0.32
VTI1A-203ENST00000472892 HERC4Q5GLZ8 1057 aaPredicted RBP17.04■□□□□ 0.32
VTI1A-203ENST00000472892 ANKRD54Q6NXT1 300 aa17.04■□□□□ 0.32
VTI1A-203ENST00000472892 AGMOQ6ZNB7 445 aa17.04■□□□□ 0.32
VTI1A-203ENST00000472892 RNF135Q8IUD6 432 aa17.04■□□□□ 0.32
VTI1A-203ENST00000472892 ZC3H11AO75152 810 aaKnown RBP eCLIP17.03■□□□□ 0.32
VTI1A-203ENST00000472892 ARL2P36404 184 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms