RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	GEMIN8	Q9NWZ8	242 aa	Known RBP	5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	TUBD1	Q9UJT1	453 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	ADAM29	Q9UKF5	820 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	CDC42EP3	Q9UKI2	254 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044		A0A1W2PR48	441 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	NPIPB6	E9PJ23	425 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	PF4V1	P10720	104 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	CSF2RB	P32927	897 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	CYP2C19	P33261	490 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	KCNQ1	P51787	676 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	CDK17	Q00537	523 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	GTF2H3	Q13889	308 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	HSP90AB2P	Q58FF8	381 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	GJC2	Q5T442	439 aa	Predicted RBP	5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	CCDC181	Q5TID7	509 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	MCTP2	Q6DN12	878 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	ZNF761	Q86XN6	746 aa	Predicted RBP	5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	UNC5B	Q8IZJ1	945 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	MYO1H	Q8N1T3	1032 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	LPP	Q93052	612 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	RELT	Q969Z4	430 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	MBD6	Q96DN6	1003 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	C8orf48	Q96LL4	319 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	AIFM3	Q96NN9	605 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	SLC2A13	Q96QE2	648 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	KRTAP4-12	Q9BQ66	201 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	CSRNP2	Q9H175	543 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	GREM2	Q9H772	168 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	MAGEL2	Q9UJ55	1249 aa		5.06	□□□□□ -1.6
PTCD3-209	ENST00000472044	LY86	O95711	162 aa		5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	CYP1A1	P04798	512 aa	Predicted RBP	5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	CT47B1	P0C2W7	299 aa	Predicted RBP	5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	GAA	P10253	952 aa		5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	MCAM	P43121	646 aa		5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	STAT5B	P51692	787 aa		5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	CD69	Q07108	199 aa		5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	USP10	Q14694	798 aa	Known RBP	5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	PKN1	Q16512	942 aa		5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	MUM1L1	Q5H9M0	696 aa		5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	TCERG1L	Q5VWI1	586 aa		5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	LMBR1L	Q6UX01	489 aa		5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	LARP4	Q71RC2	724 aa	Known RBP eCLIP	5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	THEMIS	Q8N1K5	641 aa	Predicted RBP	5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	MAGEB6	Q8N7X4	407 aa		5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	GLB1L3	Q8NCI6	653 aa	Predicted RBP	5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	COA7	Q96BR5	231 aa		5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	LCOR	Q96JN0	433 aa	Predicted RBP	5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	DNAI1	Q9UI46	699 aa		5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	CTDP1	Q9Y5B0	961 aa	Predicted RBP	5.05	□□□□□ -1.6
PTCD3-209	ENST00000472044	ADAMTS20	P59510	1910 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044		A0A1B0GTL3	188 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	DAPK3	O43293	454 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	IL33	O95760	270 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	TXK	P42681	527 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	MEOX1	P50221	254 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	SLC16A1	P53985	500 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	MGAT5	Q09328	741 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	PCOLCE	Q15113	449 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	C19orf54	Q5BKX5	351 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	ZMAT1	Q5H9K5	638 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	RRP12	Q5JTH9	1297 aa	Known RBP	5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	TAS1R1	Q7RTX1	841 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	CLEC14A	Q86T13	490 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	RTKN2	Q8IZC4	609 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	ADGRG2	Q8IZP9	1017 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	MIER2	Q8N344	545 aa		5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	RBM12	Q9NTZ6	932 aa	Known RBP	5.04	□□□□□ -1.6
PTCD3-209	ENST00000472044	RPTOR	Q8N122	1335 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	GOLGA6C	A6NDK9	693 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	GOLGA6B	A6NDN3	693 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	MROH6	A6NGR9	719 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	BTBD11	A6QL63	1104 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	PRPF3	O43395	683 aa	Known RBP	5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	NUAK1	O60285	661 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	PHF2	O75151	1096 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	TMEM127	O75204	238 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	POU2F2	P09086	479 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	LTA4H	P09960	611 aa	Known RBP	5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	GOLGA6D	P0CG33	693 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	HNRNPL	P14866	589 aa	Known RBP eCLIP	5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	LPO	P22079	712 aa	Predicted RBP	5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	MRE11	P49959	708 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	SLURP1	P55000	103 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	PPP3CA	Q08209	521 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	KIAA2012	Q0VF49	1180 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	MGAT2	Q10469	447 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	NFYC	Q13952	458 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	MLC1	Q15049	377 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	AGBL4	Q5VU57	503 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	CIAPIN1	Q6FI81	312 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	FAM180A	Q6UWF9	173 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	EPM2AIP1	Q7L775	607 aa	Predicted RBP	5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	TPH2	Q8IWU9	490 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	PRR18	Q8N4B5	295 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	PLA2G15	Q8NCC3	412 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	PIK3C3	Q8NEB9	887 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	GPR156	Q8NFN8	814 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	TTC8	Q8TAM2	541 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	SNX33	Q8WV41	574 aa		5.03	□□□□□ -1.6

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