RNA–Protein interactions for RNA: ENST00000471862.1

COL4A3-205, Transcript of collagen type IV alpha 3 chain, humanhuman

TSL 5

Gene COL4A3, Length 755 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-205ENST00000471862 RNF169Q8NCN4 708 aa12.85□□□□□ -0.35
COL4A3-205ENST00000471862 MRPS27Q92552 414 aaKnown RBP12.85□□□□□ -0.35
COL4A3-205ENST00000471862 PPP2R3CQ969Q6 453 aa12.85□□□□□ -0.35
COL4A3-205ENST00000471862 MSLNLQ96KJ4 702 aa12.85□□□□□ -0.35
COL4A3-205ENST00000471862 ZNF558Q96NG5 402 aa12.85□□□□□ -0.35
COL4A3-205ENST00000471862 MEIS3P2A8K0S8 358 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 MBTPS2O43462 519 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 DGAT1O75907 488 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 SRGAP2CP0DJJ0 459 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 XRCC6P12956 609 aaKnown RBP eCLIP12.84□□□□□ -0.35
COL4A3-205ENST00000471862 ATP2B1P20020 1258 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 PPM1AP35813 382 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 ARL2P36404 184 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 PBX3P40426 434 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 NRIP1P48552 1158 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 RAB27AP51159 221 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 PTENP60484 403 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 POU5F1BQ06416 359 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 UBXN11Q5T124 520 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 PDE12Q6L8Q7 609 aaKnown RBP12.84□□□□□ -0.35
COL4A3-205ENST00000471862 EP400NLQ6ZTU2 488 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 MRPL10Q7Z7H8 261 aaKnown RBP12.84□□□□□ -0.35
COL4A3-205ENST00000471862 NOSTRINQ8IVI9 506 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 SLC39A11Q8N1S5 342 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 C4orf32Q8N8J7 132 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 FAM184AQ8NB25 1140 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 RNF149Q8NC42 400 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 LPPQ93052 612 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 MRPL9Q9BYD2 267 aaKnown RBP12.84□□□□□ -0.35
COL4A3-205ENST00000471862 IGFLR1Q9H665 355 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 TUFT1Q9NNX1 390 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 CLEC1BQ9P126 229 aa12.84□□□□□ -0.35
COL4A3-205ENST00000471862 C5orf42Q9H799 3197 aa12.83□□□□□ -0.35
COL4A3-205ENST00000471862 MED24O75448 989 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 OFD1O75665 1012 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 EYA4O95677 639 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 OR52Z1P0C646 297 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 U2AF2P26368 475 aaKnown RBP eCLIP12.83□□□□□ -0.36
COL4A3-205ENST00000471862 TRAPPC10P48553 1259 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 SMAD4Q13485 552 aaKnown RBP12.83□□□□□ -0.36
COL4A3-205ENST00000471862 CAPSQ13938 189 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 KCNC3Q14003 757 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 MXD4Q14582 209 aaPredicted RBP12.83□□□□□ -0.36
COL4A3-205ENST00000471862 ZNF174Q15697 407 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 SMAD2Q15796 467 aaKnown RBP12.83□□□□□ -0.36
COL4A3-205ENST00000471862 AMHR2Q16671 573 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 DUSP6Q16828 381 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 TTC38Q5R3I4 469 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 AGMOQ6ZNB7 445 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 RBM23Q86U06 439 aaKnown RBP12.83□□□□□ -0.36
COL4A3-205ENST00000471862 CATSPER3Q86XQ3 398 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 GJD3Q8N144 294 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 ASAP3Q8TDY4 903 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 PIGOQ8TEQ8 1089 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 CDCA3Q99618 268 aaPredicted RBP12.83□□□□□ -0.36
COL4A3-205ENST00000471862 POLR3CQ9BUI4 534 aaPredicted RBP12.83□□□□□ -0.36
COL4A3-205ENST00000471862 SPG21Q9NZD8 308 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 PRKAG3Q9UGI9 489 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 CD207Q9UJ71 328 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 FAM50BQ9Y247 325 aa12.83□□□□□ -0.36
COL4A3-205ENST00000471862 A0A087WWV3 80 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 C19orf67A6NJJ6 358 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 TSPAN1O60635 241 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 CD2BP2O95400 341 aaKnown RBP12.82□□□□□ -0.36
COL4A3-205ENST00000471862 GLRA2P23416 452 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 RPA1P27694 616 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 TECP42680 631 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 NDUFV1P49821 464 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 BCAR1P56945 870 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 ZP2Q05996 745 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 COASYQ13057 564 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 PCBP1Q15365 356 aaKnown RBP eCLIP12.82□□□□□ -0.36
COL4A3-205ENST00000471862 CLUL1Q15846 466 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 NOMO2Q5JPE7 1267 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 PLPP4Q5VZY2 271 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 SMRP1Q8NCR6 262 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 VN1R2Q8NFZ6 395 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 NFKBIZQ9BYH8 718 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 EPHX3Q9H6B9 360 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 NRDE2Q9H7Z3 1164 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 TLE6Q9H808 572 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 TBC1D13Q9NVG8 400 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 PUF60Q9UHX1 559 aaKnown RBP12.82□□□□□ -0.36
COL4A3-205ENST00000471862 DBR1Q9UK59 544 aaKnown RBP12.82□□□□□ -0.36
COL4A3-205ENST00000471862 PCDHB2Q9Y5E7 798 aa12.82□□□□□ -0.36
COL4A3-205ENST00000471862 FSD2A1L4K1 749 aa12.81□□□□□ -0.36
COL4A3-205ENST00000471862 NT5C1B-RDH14C9J2C7 533 aa12.81□□□□□ -0.36
COL4A3-205ENST00000471862 PI4K2BG5E9Z4 385 aa12.81□□□□□ -0.36
COL4A3-205ENST00000471862 PER2O15055 1255 aa12.81□□□□□ -0.36
COL4A3-205ENST00000471862 B4GALT3O60512 393 aa12.81□□□□□ -0.36
COL4A3-205ENST00000471862 USO1O60763 962 aaKnown RBP12.81□□□□□ -0.36
COL4A3-205ENST00000471862 NCLP19338 710 aaKnown RBP12.81□□□□□ -0.36
COL4A3-205ENST00000471862 MUTP22033 750 aa12.81□□□□□ -0.36
COL4A3-205ENST00000471862 AXLP30530 894 aa12.81□□□□□ -0.36
COL4A3-205ENST00000471862 TOB1P50616 345 aaPredicted RBP12.81□□□□□ -0.36
COL4A3-205ENST00000471862 FXR2P51116 673 aaKnown RBP eCLIP12.81□□□□□ -0.36
COL4A3-205ENST00000471862 KRT17Q04695 432 aa12.81□□□□□ -0.36
COL4A3-205ENST00000471862 MBTD1Q05BQ5 628 aa12.81□□□□□ -0.36
COL4A3-205ENST00000471862 TFDP1Q14186 410 aa12.81□□□□□ -0.36
COL4A3-205ENST00000471862 NBR1Q14596 966 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms