RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 MEA1Q16626 185 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 CPNE8Q86YQ8 564 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 C4orf33Q8N1A6 199 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 DHX38Q92620 1227 aaKnown RBP11.51□□□□□ -0.57
CHD3-208ENST00000470531 PBKQ96KB5 322 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 C11orf70Q9BRQ4 267 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 IQCGQ9H095 443 aaKnown RBP11.51□□□□□ -0.57
CHD3-208ENST00000470531 LARSQ9P2J5 1176 aaKnown RBP11.51□□□□□ -0.57
CHD3-208ENST00000470531 CTNNAL1Q9UBT7 734 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 POLR2MP0CAP2 368 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 ATP2B4P23634 1241 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 PAX7P23759 505 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 PLA2G4FQ68DD2 849 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 HIPK4Q8NE63 616 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 TPCN2Q8NHX9 752 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 KRT35Q92764 455 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 ARHGEF26Q96DR7 871 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 DDX23Q9BUQ8 820 aaKnown RBP11.5□□□□□ -0.57
CHD3-208ENST00000470531 METTL14Q9HCE5 456 aaKnown RBP11.5□□□□□ -0.57
CHD3-208ENST00000470531 CCPG1Q9ULG6 757 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 GJB6O95452 261 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 BRAFP15056 766 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 CLEC4GQ6UXB4 293 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 TAOK1Q7L7X3 1001 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 PARP9Q8IXQ6 854 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 BAP1Q92560 729 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 PRCCQ92733 491 aaPredicted RBP11.5□□□□□ -0.57
CHD3-208ENST00000470531 CHMP6Q96FZ7 201 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 NUP85Q9BW27 656 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 HOMER3Q9NSC5 361 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 KLHL14Q9P2G3 628 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 DDX20Q9UHI6 824 aaKnown RBP11.5□□□□□ -0.57
CHD3-208ENST00000470531 LRRIQ4A6NIV6 560 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 ENO4A6NNW6 628 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 PPEF1O14829 653 aaPredicted RBP11.5□□□□□ -0.57
CHD3-208ENST00000470531 ATF2P15336 505 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 LMNB1P20700 586 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 COMTP21964 271 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 GSCP56915 257 aaPredicted RBP11.5□□□□□ -0.57
CHD3-208ENST00000470531 ATP11AP98196 1134 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 RCN2Q14257 317 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 MDH1BQ5I0G3 518 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 TBC1D22AQ8WUA7 517 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 TTYH3Q9C0H2 523 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 YIPF3Q9GZM5 350 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 INTS2Q9H0H0 1204 aaKnown RBP11.5□□□□□ -0.57
CHD3-208ENST00000470531 FAM114A2Q9NRY5 505 aa11.5□□□□□ -0.57
CHD3-208ENST00000470531 CNOT8Q9UFF9 292 aaKnown RBP11.5□□□□□ -0.57
CHD3-208ENST00000470531 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.49□□□□□ -0.57
CHD3-208ENST00000470531 CCDC160A6NGH7 325 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 CHUKO15111 745 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 PPIP5K2O43314 1243 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 DIAPH2O60879 1101 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 ECEL1O95672 775 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 SBK1Q52WX2 424 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 PALB2Q86YC2 1186 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 ANKMY2Q8IV38 441 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 TBC1D16Q8TBP0 767 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 ANAPC5Q9UJX4 755 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 SSU72P8A0A1W2PR75 194 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 RPS6KA4O75676 772 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 BAG2O95816 211 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 PDE6CP51160 858 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 ZNF844Q08AG5 666 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 SYDE2Q5VT97 1194 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 PRAMEF18Q5VWM3 479 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 PRR5LQ6MZQ0 368 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 LRRC55Q6ZSA7 311 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 TRIM59Q8IWR1 403 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 SCYL3Q8IZE3 742 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 CCDC33Q8N5R6 958 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 HAS1Q92839 578 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 TOPORSQ9NS56 1045 aaPredicted RBP11.49□□□□□ -0.57
CHD3-208ENST00000470531 EML1O00423 815 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 FAM107AO95990 144 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 GAS8O95995 478 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 NDUFB10O96000 172 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 CA4P22748 312 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 USP11P51784 963 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 NEDD9Q14511 834 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 WDR44Q5JSH3 913 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 CDR2LQ86X02 465 aaPredicted RBP11.49□□□□□ -0.57
CHD3-208ENST00000470531 JAMLQ86YT9 394 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 CBWD1Q9BRT8 395 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 LXNQ9BS40 222 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 MTA3Q9BTC8 594 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 ETNK1Q9HBU6 452 aa11.49□□□□□ -0.57
CHD3-208ENST00000470531 FAM86B1E9PN63 330 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 DDX3XO00571 662 aaKnown RBP eCLIP11.48□□□□□ -0.57
CHD3-208ENST00000470531 TPD52L2O43399 206 aaKnown RBP11.48□□□□□ -0.57
CHD3-208ENST00000470531 FAM86B2P0C5J1 330 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 ELF1P32519 619 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 CRKP46108 304 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 CUL1Q13616 776 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 C16orf86Q6ZW13 317 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 ZBTB33Q86T24 672 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 RTFDC1Q9BY42 306 aaPredicted RBP11.48□□□□□ -0.57
CHD3-208ENST00000470531 C10orf88Q9H8K7 445 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 LRRC4CQ9HCJ2 640 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 PASKQ96RG2 1323 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms