RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 IFT74Q96LB3 600 aa16.33■□□□□ 0.2
COL9A3-209ENST00000469852 GCOM2Q9BZD3 368 aaPredicted RBP16.33■□□□□ 0.2
COL9A3-209ENST00000469852 LRRC27Q9C0I9 530 aa16.33■□□□□ 0.2
COL9A3-209ENST00000469852 USP20Q9Y2K6 914 aa16.33■□□□□ 0.2
COL9A3-209ENST00000469852 TTLL13PA6NNM8 815 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 CXCL10P02778 98 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 ACRP10323 421 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 PHKA2P46019 1235 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 CASP5P51878 434 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 NCKAP1LP55160 1127 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 POU5F1BQ06416 359 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 PPP2R5AQ15172 486 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 CAMK4Q16566 473 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 AMHR2Q16671 573 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 KANK3Q6NY19 840 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 TSHZ1Q6ZSZ6 1077 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 UNC13DQ70J99 1090 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 TMEM199Q8N511 208 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 TMEM161BQ8NDZ6 487 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 DEPTORQ8TB45 409 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 SPIRE2Q8WWL2 714 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 NTPCRQ9BSD7 190 aaKnown RBP16.32■□□□□ 0.2
COL9A3-209ENST00000469852 CCDC113Q9H0I3 377 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 C17orf75Q9HAS0 396 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 ERVK-5Q9HDB9 667 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 KMT5AQ9NQR1 393 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 LARSQ9P2J5 1176 aaKnown RBP16.32■□□□□ 0.2
COL9A3-209ENST00000469852 ARHGAP28Q9P2N2 729 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 PADI3Q9ULW8 664 aa16.32■□□□□ 0.2
COL9A3-209ENST00000469852 INO80B-WBP1J3KQ70 363 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 B4GALT5O43286 388 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 TRAK2O60296 914 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 RPS6KA5O75582 802 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 RPN1P04843 607 aaKnown RBP16.31■□□□□ 0.2
COL9A3-209ENST00000469852 GAP43P17677 238 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 MAGEA10P43363 369 aaPredicted RBP16.31■□□□□ 0.2
COL9A3-209ENST00000469852 CDC42EP1Q00587 391 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 FPGSQ05932 587 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 KMT5BQ4FZB7 885 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 ZC2HC1CQ53FD0 456 aaPredicted RBP16.31■□□□□ 0.2
COL9A3-209ENST00000469852 PLEKHG4Q58EX7 1191 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 HERC4Q5GLZ8 1057 aaPredicted RBP16.31■□□□□ 0.2
COL9A3-209ENST00000469852 SRGAP1Q7Z6B7 1085 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 CCDC65Q8IXS2 484 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 DBF4BQ8NFT6 615 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 NFKBIZQ9BYH8 718 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 INO80BQ9C086 356 aaPredicted RBP16.31■□□□□ 0.2
COL9A3-209ENST00000469852 TMX1Q9H3N1 280 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 CLSTN2Q9H4D0 955 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 ST3GAL5Q9UNP4 418 aa16.31■□□□□ 0.2
COL9A3-209ENST00000469852 PVALEFA0A1B0GWK0 134 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 K7ENM7 598 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 SOX1O00570 391 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-209ENST00000469852 MGEA5O60502 916 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 MYL1P05976 194 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 MYBP10242 640 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 MAPTP10636 758 aaKnown RBP16.3■□□□□ 0.2
COL9A3-209ENST00000469852 RFC2P35250 354 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 HAUS6Q7Z4H7 955 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 FAM178BQ8IXR5 827 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 ELOA2Q8IYF1 753 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-209ENST00000469852 ZNF710Q8N1W2 664 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 LINC01599Q8WXQ3 324 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 STRA6Q9BX79 667 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 IFIH1Q9BYX4 1025 aaKnown RBP16.3■□□□□ 0.2
COL9A3-209ENST00000469852 IKZF4Q9H2S9 585 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 IL23AQ9NPF7 189 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 OLFML3Q9NRN5 406 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 PCDHA5Q9Y5H7 936 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 SQORQ9Y6N5 450 aa16.3■□□□□ 0.2
COL9A3-209ENST00000469852 MICAL3Q7RTP6 2002 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 PHLPP2Q6ZVD8 1323 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 A0A1W2PPC1 479 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 DENND3A2RUS2 1198 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 TSPAN1O60635 241 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 PPP1R37O75864 691 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 KCNA1Q09470 495 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 NFX1Q12986 1120 aaKnown RBP16.29■□□□□ 0.2
COL9A3-209ENST00000469852 PAK2Q13177 524 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 CATSPER4Q7RTX7 472 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 ZNF720Q7Z2F6 126 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 ZBTB8OSQ8IWT0 167 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 SPATA20Q8TB22 786 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 CPB2Q96IY4 423 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 C2orf40Q9H1Z8 148 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 FZD8Q9H461 694 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 MRPL44Q9H9J2 332 aaKnown RBP16.29■□□□□ 0.2
COL9A3-209ENST00000469852 SLC39A2Q9NP94 309 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 SEL1LQ9UBV2 794 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 LAMA3Q16787 3333 aa16.29■□□□□ 0.2
COL9A3-209ENST00000469852 PTPRSQ13332 1948 aa16.28■□□□□ 0.2
COL9A3-209ENST00000469852 PARNO95453 639 aaKnown RBP16.28■□□□□ 0.2
COL9A3-209ENST00000469852 MBD3O95983 291 aa16.28■□□□□ 0.2
COL9A3-209ENST00000469852 PRKCBP05771 671 aa16.28■□□□□ 0.2
COL9A3-209ENST00000469852 SFPQP23246 707 aaKnown RBP eCLIP16.28■□□□□ 0.2
COL9A3-209ENST00000469852 HOXA11P31270 313 aaPredicted RBP16.28■□□□□ 0.2
COL9A3-209ENST00000469852 SARSP49591 514 aaKnown RBP16.28■□□□□ 0.2
COL9A3-209ENST00000469852 SMTNP53814 917 aa16.28■□□□□ 0.2
COL9A3-209ENST00000469852 STK4Q13043 487 aa16.28■□□□□ 0.2
COL9A3-209ENST00000469852 PPIGQ13427 754 aaKnown RBP eCLIP16.28■□□□□ 0.27e-33■■■□□ 14.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms