RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 OTUD6AQ7L8S5 288 aa18.21■□□□□ 0.51
COL9A3-208ENST00000469802 CATSPER4Q7RTX7 472 aa18.21■□□□□ 0.51
COL9A3-208ENST00000469802 RBM23Q86U06 439 aaKnown RBP18.21■□□□□ 0.51
COL9A3-208ENST00000469802 SLC39A11Q8N1S5 342 aa18.21■□□□□ 0.51
COL9A3-208ENST00000469802 VN1R2Q8NFZ6 395 aa18.21■□□□□ 0.51
COL9A3-208ENST00000469802 CDCA3Q99618 268 aaPredicted RBP18.21■□□□□ 0.51
COL9A3-208ENST00000469802 EIF2AK1Q9BQI3 630 aaKnown RBP18.21■□□□□ 0.51
COL9A3-208ENST00000469802 TLE6Q9H808 572 aa18.21■□□□□ 0.51
COL9A3-208ENST00000469802 TTC12Q9H892 705 aaPredicted RBP18.21■□□□□ 0.51
COL9A3-208ENST00000469802 MINDY3Q9H8M7 445 aa18.21■□□□□ 0.51
COL9A3-208ENST00000469802 FAM105AQ9NUU6 356 aa18.21■□□□□ 0.51
COL9A3-208ENST00000469802 PCDHA12Q9UN75 941 aa18.21■□□□□ 0.51
COL9A3-208ENST00000469802 MEIS3P2A8K0S8 358 aa18.2■□□□□ 0.5
COL9A3-208ENST00000469802 GPR37L1O60883 481 aa18.2■□□□□ 0.5
COL9A3-208ENST00000469802 CENPBP07199 599 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-208ENST00000469802 SKIP12755 728 aa18.2■□□□□ 0.5
COL9A3-208ENST00000469802 C8orf34Q49A92 452 aa18.2■□□□□ 0.5
COL9A3-208ENST00000469802 XKR9Q5GH70 373 aa18.2■□□□□ 0.5
COL9A3-208ENST00000469802 SRGAP1Q7Z6B7 1085 aa18.2■□□□□ 0.5
COL9A3-208ENST00000469802 FERMT3Q86UX7 667 aa18.2■□□□□ 0.5
COL9A3-208ENST00000469802 TCP11Q8WWU5 503 aa18.2■□□□□ 0.5
COL9A3-208ENST00000469802 LPPQ93052 612 aa18.2■□□□□ 0.5
COL9A3-208ENST00000469802 LLPHQ9BRT6 129 aaKnown RBP18.2■□□□□ 0.5
COL9A3-208ENST00000469802 LRFN3Q9BTN0 628 aa18.2■□□□□ 0.5
COL9A3-208ENST00000469802 BMP2KQ9NSY1 1161 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-208ENST00000469802 SPG21Q9NZD8 308 aa18.2■□□□□ 0.5
COL9A3-208ENST00000469802 BARX2Q9UMQ3 279 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-208ENST00000469802 RBM10P98175 930 aaKnown RBP18.19■□□□□ 0.5
COL9A3-208ENST00000469802 TMEM31Q5JXX7 168 aa18.19■□□□□ 0.5
COL9A3-208ENST00000469802 PLPP4Q5VZY2 271 aa18.19■□□□□ 0.5
COL9A3-208ENST00000469802 CCDC83Q8IWF9 413 aa18.19■□□□□ 0.5
COL9A3-208ENST00000469802 TPH2Q8IWU9 490 aa18.19■□□□□ 0.5
COL9A3-208ENST00000469802 MICAL1Q8TDZ2 1067 aa18.19■□□□□ 0.5
COL9A3-208ENST00000469802 POP1Q99575 1024 aaKnown RBP18.19■□□□□ 0.5
COL9A3-208ENST00000469802 MTRQ99707 1265 aa18.19■□□□□ 0.5
COL9A3-208ENST00000469802 TCF25Q9BQ70 676 aa18.19■□□□□ 0.5
COL9A3-208ENST00000469802 TMEM60Q9H2L4 133 aa18.19■□□□□ 0.5
COL9A3-208ENST00000469802 NGRNQ9NPE2 291 aaKnown RBP18.19■□□□□ 0.5
COL9A3-208ENST00000469802 ANKEF1Q9NU02 776 aa18.19■□□□□ 0.5
COL9A3-208ENST00000469802 RAPGEFL1Q9UHV5 662 aa18.19■□□□□ 0.5
COL9A3-208ENST00000469802 POTEMA6NI47 508 aa18.18■□□□□ 0.5
COL9A3-208ENST00000469802 HIDE1A8MVS5 230 aa18.18■□□□□ 0.5
COL9A3-208ENST00000469802 PER2O15055 1255 aa18.18■□□□□ 0.5
COL9A3-208ENST00000469802 ASAP2O43150 1006 aa18.18■□□□□ 0.5
COL9A3-208ENST00000469802 SRGAP2CP0DJJ0 459 aa18.18■□□□□ 0.5
COL9A3-208ENST00000469802 HOXA11P31270 313 aaPredicted RBP18.18■□□□□ 0.5
COL9A3-208ENST00000469802 BCAR1P56945 870 aa18.18■□□□□ 0.5
COL9A3-208ENST00000469802 GLB1LQ6UWU2 654 aa18.18■□□□□ 0.5
COL9A3-208ENST00000469802 TMEM184AQ6ZMB5 413 aa18.18■□□□□ 0.5
COL9A3-208ENST00000469802 IFNLR1Q8IU57 520 aaPredicted RBP18.18■□□□□ 0.5
COL9A3-208ENST00000469802 RNF149Q8NC42 400 aa18.18■□□□□ 0.5
COL9A3-208ENST00000469802 ENTPD7Q9NQZ7 604 aa18.18■□□□□ 0.5
COL9A3-208ENST00000469802 TBC1D13Q9NVG8 400 aa18.18■□□□□ 0.5
COL9A3-208ENST00000469802 PUF60Q9UHX1 559 aaKnown RBP18.18■□□□□ 0.5
COL9A3-208ENST00000469802 OFD1O75665 1012 aa18.17■□□□□ 0.5
COL9A3-208ENST00000469802 DGAT1O75907 488 aa18.17■□□□□ 0.5
COL9A3-208ENST00000469802 TXKP42681 527 aa18.17■□□□□ 0.5
COL9A3-208ENST00000469802 RARRES1P49788 294 aa18.17■□□□□ 0.5
COL9A3-208ENST00000469802 GUCY1B3Q02153 619 aa18.17■□□□□ 0.5
COL9A3-208ENST00000469802 KRT17Q04695 432 aa18.17■□□□□ 0.5
COL9A3-208ENST00000469802 MXD4Q14582 209 aaPredicted RBP18.17■□□□□ 0.5
COL9A3-208ENST00000469802 PCBP1Q15365 356 aaKnown RBP eCLIP18.17■□□□□ 0.5
COL9A3-208ENST00000469802 NOMO2Q5JPE7 1267 aa18.17■□□□□ 0.5
COL9A3-208ENST00000469802 UBXN11Q5T124 520 aa18.17■□□□□ 0.5
COL9A3-208ENST00000469802 AGMOQ6ZNB7 445 aa18.17■□□□□ 0.5
COL9A3-208ENST00000469802 MRPL10Q7Z7H8 261 aaKnown RBP18.17■□□□□ 0.5
COL9A3-208ENST00000469802 TMEM173Q86WV6 379 aaPredicted RBP18.17■□□□□ 0.5
COL9A3-208ENST00000469802 C8orf76Q96K31 380 aa18.17■□□□□ 0.5
COL9A3-208ENST00000469802 USP15Q9Y4E8 981 aaPredicted RBP18.17■□□□□ 0.5
COL9A3-208ENST00000469802 PCDHB2Q9Y5E7 798 aa18.17■□□□□ 0.5
COL9A3-208ENST00000469802 DENND4AQ7Z401 1863 aa18.17■□□□□ 0.5
COL9A3-208ENST00000469802 TRIOO75962 3097 aa18.16■□□□□ 0.5
COL9A3-208ENST00000469802 CARNS1A5YM72 827 aa18.16■□□□□ 0.5
COL9A3-208ENST00000469802 DCXO43602 365 aa18.16■□□□□ 0.5
COL9A3-208ENST00000469802 B4GALT3O60512 393 aa18.16■□□□□ 0.5
COL9A3-208ENST00000469802 SPATA31C1P0DKV0 1188 aa18.16■□□□□ 0.5
COL9A3-208ENST00000469802 ALADP13716 330 aa18.16■□□□□ 0.5
COL9A3-208ENST00000469802 MCM7P33993 719 aa18.16■□□□□ 0.5
COL9A3-208ENST00000469802 PTENP60484 403 aa18.16■□□□□ 0.5
COL9A3-208ENST00000469802 POU5F1BQ06416 359 aa18.16■□□□□ 0.5
COL9A3-208ENST00000469802 ORC2Q13416 577 aaPredicted RBP18.16■□□□□ 0.5
COL9A3-208ENST00000469802 SAFBQ15424 915 aaKnown RBP eCLIP18.16■□□□□ 0.5
COL9A3-208ENST00000469802 FBXO18Q8NFZ0 1043 aa18.16■□□□□ 0.5
COL9A3-208ENST00000469802 ASAP3Q8TDY4 903 aa18.16■□□□□ 0.5
COL9A3-208ENST00000469802 SUSD6Q92537 303 aa18.16■□□□□ 0.5
COL9A3-208ENST00000469802 ZSCAN31Q96LW9 406 aaPredicted RBP18.16■□□□□ 0.5
COL9A3-208ENST00000469802 FOXP1Q9H334 677 aaPredicted RBP18.16■□□□□ 0.5
COL9A3-208ENST00000469802 SH2B1Q9NRF2 756 aaPredicted RBP18.16■□□□□ 0.5
COL9A3-208ENST00000469802 CNTNAP2Q9UHC6 1331 aa18.16■□□□□ 0.5
COL9A3-208ENST00000469802 FAM86C2PA6NEL3 165 aa18.15■□□□□ 0.5
COL9A3-208ENST00000469802 C2orf71A6NGG8 1288 aa18.15■□□□□ 0.5
COL9A3-208ENST00000469802 TSPAN1O60635 241 aa18.15■□□□□ 0.5
COL9A3-208ENST00000469802 ZC3H11AO75152 810 aaKnown RBP eCLIP18.15■□□□□ 0.57e-13■■■□□ 15.3
COL9A3-208ENST00000469802 XRCC6P12956 609 aaKnown RBP eCLIP18.15■□□□□ 0.5
COL9A3-208ENST00000469802 ARL2P36404 184 aa18.15■□□□□ 0.5
COL9A3-208ENST00000469802 ALDH7A1P49419 539 aaKnown RBP18.15■□□□□ 0.5
COL9A3-208ENST00000469802 HMGN5P82970 282 aaKnown RBP18.15■□□□□ 0.5
COL9A3-208ENST00000469802 CAPSQ13938 189 aa18.15■□□□□ 0.5
COL9A3-208ENST00000469802 SMC1AQ14683 1233 aaKnown RBP18.15■□□□□ 0.5
COL9A3-208ENST00000469802 LONRF3Q496Y0 759 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms