RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 CRNKL1Q9BZJ0 848 aaKnown RBP10.43□□□□□ -0.74
HDAC3-205ENST00000469550 LRRC27Q9C0I9 530 aa10.43□□□□□ -0.74
HDAC3-205ENST00000469550 KDM4CQ9H3R0 1056 aa10.43□□□□□ -0.74
HDAC3-205ENST00000469550 PPANQ9NQ55 473 aaKnown RBP10.43□□□□□ -0.74
HDAC3-205ENST00000469550 BARHL2Q9NY43 387 aa10.43□□□□□ -0.74
HDAC3-205ENST00000469550 ARPP21Q9UBL0 812 aaPredicted RBP10.43□□□□□ -0.74
HDAC3-205ENST00000469550 ODF2LQ9ULJ1 636 aa10.43□□□□□ -0.74
HDAC3-205ENST00000469550 SPDYE16A6NNV3 312 aaPredicted RBP10.42□□□□□ -0.74
HDAC3-205ENST00000469550 SOX1O00570 391 aaPredicted RBP10.42□□□□□ -0.74
HDAC3-205ENST00000469550 NMT2O60551 498 aa10.42□□□□□ -0.74
HDAC3-205ENST00000469550 DNAJC8O75937 253 aaPredicted RBP10.42□□□□□ -0.74
HDAC3-205ENST00000469550 PPP2R2AP63151 447 aa10.42□□□□□ -0.74
HDAC3-205ENST00000469550 ZNF844Q08AG5 666 aa10.42□□□□□ -0.74
HDAC3-205ENST00000469550 CCL14Q16627 93 aa10.42□□□□□ -0.74
HDAC3-205ENST00000469550 STAG2Q8N3U4 1231 aa10.42□□□□□ -0.74
HDAC3-205ENST00000469550 RASGRP4Q8TDF6 673 aa10.42□□□□□ -0.74
HDAC3-205ENST00000469550 TAF4BQ92750 862 aa10.42□□□□□ -0.74
HDAC3-205ENST00000469550 GPKOWQ92917 476 aaPredicted RBP eCLIP10.42□□□□□ -0.745e-7■■■□□ 17.4
HDAC3-205ENST00000469550 CENPTQ96BT3 561 aa10.42□□□□□ -0.74
HDAC3-205ENST00000469550 SEC16BQ96JE7 1060 aa10.42□□□□□ -0.74
HDAC3-205ENST00000469550 LZTS2Q9BRK4 669 aa10.42□□□□□ -0.74
HDAC3-205ENST00000469550 MMTAG2Q9BU76 263 aaKnown RBP10.42□□□□□ -0.74
HDAC3-205ENST00000469550 AIPL1Q9NZN9 384 aa10.42□□□□□ -0.74
HDAC3-205ENST00000469550 ATP8B3O60423 1300 aa10.42□□□□□ -0.74
HDAC3-205ENST00000469550 CCDC188H7C350 402 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 STXBP3O00186 592 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 DNM1LO00429 736 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 MGRN1O60291 552 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 EZRP15311 586 aaKnown RBP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 GCFC2P16383 781 aaKnown RBP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 KLRC1P26715 233 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 CCND3P30281 292 aaPredicted RBP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 EHHADHQ08426 723 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 CRYMQ14894 314 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 UAP1Q16222 522 aaPredicted RBP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 IFI16Q16666 785 aaKnown RBP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 TDRD12Q587J7 1177 aaKnown RBP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 FAM83BQ5T0W9 1011 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 MFSD14CQ5VZR4 134 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 CACNA2D3Q8IZS8 1091 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 SHCBP1Q8NEM2 672 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 TATDN2Q93075 761 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 MIEF2Q96C03 454 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 TSG101Q99816 390 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 ZMYND12Q9H0C1 365 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 CNOT10Q9H9A5 744 aaKnown RBP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 SLC39A2Q9NP94 309 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 DCP1AQ9NPI6 582 aaPredicted RBP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 BTBD7Q9P203 1132 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 SWAP70Q9UH65 585 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 GREB1LQ9C091 1923 aaPredicted RBP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 BAZ2AQ9UIF9 1905 aaKnown RBP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 TSPY2A6NKD2 308 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 MSCO60682 206 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 NOL4O94818 638 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 USP11P51784 963 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 MARSP56192 900 aaKnown RBP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 SEPT2Q15019 361 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 NONOQ15233 471 aaKnown RBP eCLIP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 RPS6KA1Q15418 735 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 ZYXQ15942 572 aaKnown RBP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 LRIT3Q3SXY7 679 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 FAM47AQ5JRC9 791 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 GKAP1Q5VSY0 366 aaPredicted RBP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 FAM228AQ86W67 206 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 SEC14L1Q92503 715 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 CCT6BQ92526 530 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 RPAP3Q9H6T3 665 aaPredicted RBP10.41□□□□□ -0.74
HDAC3-205ENST00000469550 ATP6V0A4Q9HBG4 840 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 MAD2L2Q9UI95 211 aa10.41□□□□□ -0.74
HDAC3-205ENST00000469550 LTBP2Q14767 1821 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 MYMKA6NI61 221 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 KIF4AO95239 1232 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 GNA14O95837 355 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 FTCDO95954 541 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 ERCC3P19447 782 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 HPDP32754 393 aaPredicted RBP10.4□□□□□ -0.74
HDAC3-205ENST00000469550 CTNNA1P35221 906 aaKnown RBP10.4□□□□□ -0.74
HDAC3-205ENST00000469550 MAGEA10P43363 369 aaPredicted RBP10.4□□□□□ -0.74
HDAC3-205ENST00000469550 SCTRP47872 440 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 EIF3BP55884 814 aaKnown RBP10.4□□□□□ -0.74
HDAC3-205ENST00000469550 FKBP3Q00688 224 aaKnown RBP10.4□□□□□ -0.74
HDAC3-205ENST00000469550 BYSLQ13895 437 aaKnown RBP10.4□□□□□ -0.74
HDAC3-205ENST00000469550 HLTFQ14527 1009 aaKnown RBP eCLIP10.4□□□□□ -0.74
HDAC3-205ENST00000469550 TRADDQ15628 312 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 TLDC1Q6P9B6 456 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 TMEM179Q6ZVK1 233 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 PNMA1Q8ND90 353 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 BANK1Q8NDB2 785 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 RAPGEF5Q92565 580 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 LPAR1Q92633 364 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 CEP63Q96MT8 703 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 SLITRK6Q9H5Y7 841 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 BLOC1S4Q9NUP1 217 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 FLRT1Q9NZU1 646 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 ZMYND8Q9ULU4 1186 aaPredicted RBP10.4□□□□□ -0.74
HDAC3-205ENST00000469550 TPX2Q9ULW0 747 aaKnown RBP10.4□□□□□ -0.74
HDAC3-205ENST00000469550 COL4A3BPQ9Y5P4 624 aa10.4□□□□□ -0.74
HDAC3-205ENST00000469550 A0A1W2PRG0 241 aa10.39□□□□□ -0.75
HDAC3-205ENST00000469550 GSTA1P08263 222 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms