RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 HLTFQ14527 1009 aaKnown RBP eCLIP20.72■□□□□ 0.914e-7■□□□□ 8.4
VIM-203ENST00000469543 FAM102BQ5T8I3 360 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 DCAF12L1Q5VU92 463 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 SCFD2Q8WU76 684 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 ZBED3Q96IU2 234 aaPredicted RBP20.72■□□□□ 0.91
VIM-203ENST00000469543 UBIAD1Q9Y5Z9 338 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 RPTORQ8N122 1335 aa20.72■□□□□ 0.91
VIM-203ENST00000469543 ANKRD63C9JTQ0 380 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 KRIT1O00522 736 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 GLE1Q53GS7 698 aaKnown RBP20.71■□□□□ 0.91
VIM-203ENST00000469543 NBPF12Q5TAG4 269 aaPredicted RBP20.71■□□□□ 0.91
VIM-203ENST00000469543 TAF3Q5VWG9 929 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 CBWD2Q8IUF1 395 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 AGBL3Q8NEM8 1001 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 HSPBP1Q9NZL4 362 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 STXBP5LQ9Y2K9 1186 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 VAMP7P51809 220 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 SLFN11Q7Z7L1 901 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 OR2W6PQ8NHA6 318 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 RSPH14Q9UHP6 348 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 CCDC169A6NNP5 214 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 ATMINO43313 823 aaPredicted RBP20.71■□□□□ 0.91
VIM-203ENST00000469543 TNFAIP3P21580 790 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 ECHS1P30084 290 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 ADSSP30520 456 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 ATP1A2P50993 1020 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 LLGL1Q15334 1064 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 XKR9Q5GH70 373 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 FKBP1CQ5VVH2 108 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 POTEAQ6S8J7 498 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 STXBP4Q6ZWJ1 553 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 CPNE8Q86YQ8 564 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 FAM76AQ8TAV0 307 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 CAVIN3Q969G5 261 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 ATG4CQ96DT6 458 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 TRIM31Q9BZY9 425 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 RPAP3Q9H6T3 665 aaPredicted RBP20.71■□□□□ 0.91
VIM-203ENST00000469543 KCND2Q9NZV8 630 aa20.71■□□□□ 0.91
VIM-203ENST00000469543 FGGP02679 453 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 ADRB2P07550 413 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 PLS3P13797 630 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 MAP2K1Q02750 393 aaPredicted RBP20.7■□□□□ 0.9
VIM-203ENST00000469543 MAP3K10Q02779 954 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 NFIL3Q16649 462 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 PCNX4Q63HM2 1172 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 IQCKQ8N0W5 287 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 KCTD17Q8N5Z5 321 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 TMOD4Q9NZQ9 345 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 RGS17Q9UGC6 210 aaPredicted RBP20.7■□□□□ 0.9
VIM-203ENST00000469543 CENPFP49454 3210 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 PEX10O60683 326 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 BAATQ14032 418 aaPredicted RBP20.7■□□□□ 0.9
VIM-203ENST00000469543 PPP2R5AQ15172 486 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 CIAPIN1Q6FI81 312 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 ANO5Q75V66 913 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 SH3GL2Q99962 352 aa20.7■□□□□ 0.9
VIM-203ENST00000469543 TOPORSQ9NS56 1045 aaPredicted RBP20.7■□□□□ 0.9
VIM-203ENST00000469543 TRIM66O15016 1216 aa20.69■□□□□ 0.9
VIM-203ENST00000469543 TTI1O43156 1089 aa20.69■□□□□ 0.9
VIM-203ENST00000469543 BCRP11274 1271 aa20.69■□□□□ 0.9
VIM-203ENST00000469543 HES6Q96HZ4 224 aa20.69■□□□□ 0.9
VIM-203ENST00000469543 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.69■□□□□ 0.92e-7■■■■□ 26.5
VIM-203ENST00000469543 WDR46O15213 610 aaKnown RBP20.69■□□□□ 0.9
VIM-203ENST00000469543 HSF2BPO75031 334 aa20.69■□□□□ 0.9
VIM-203ENST00000469543 ZBTB7AO95365 584 aa20.69■□□□□ 0.9
VIM-203ENST00000469543 KRT13P13646 458 aa20.69■□□□□ 0.9
VIM-203ENST00000469543 RNF207Q6ZRF8 634 aa20.69■□□□□ 0.9
VIM-203ENST00000469543 MTMR14Q8NCE2 650 aa20.69■□□□□ 0.9
VIM-203ENST00000469543 ACTRT1Q8TDG2 376 aa20.69■□□□□ 0.9
VIM-203ENST00000469543 CTNNBL1Q8WYA6 563 aaPredicted RBP20.69■□□□□ 0.9
VIM-203ENST00000469543 SEMA4DQ92854 862 aa20.69■□□□□ 0.9
VIM-203ENST00000469543 PDCD2LQ9BRP1 358 aa20.69■□□□□ 0.9
VIM-203ENST00000469543 TMEM110-MUSTN1A8MSY1 372 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 PGRMC1O00264 195 aaKnown RBP20.68■□□□□ 0.9
VIM-203ENST00000469543 DAPK3O43293 454 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 SGPL1O95470 568 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 TNNC1P63316 161 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 BSNDQ8WZ55 320 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 ALG3Q92685 438 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 TMEM117Q9H0C3 514 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 DEFB129Q9H1M3 183 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 FTLP02792 175 aaPredicted RBP20.68■□□□□ 0.9
VIM-203ENST00000469543 LMNB1P20700 586 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 MARCKSL1P49006 195 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 PAK2Q13177 524 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 IFI16Q16666 785 aaKnown RBP20.68■□□□□ 0.9
VIM-203ENST00000469543 CFAP58Q5T655 872 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 ARHGEF16Q5VV41 709 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 XXYLT1Q8NBI6 393 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 BTBD6Q96KE9 485 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 RUFY1Q96T51 708 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 PCDHB18PQ96TA0 734 aa20.68■□□□□ 0.9
VIM-203ENST00000469543 MUTP22033 750 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 TNFRSF8P28908 595 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 IRAK1P51617 712 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 NNTQ13423 1086 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 MKRN4PQ13434 485 aaPredicted RBP20.67■□□□□ 0.9
VIM-203ENST00000469543 TNIP1Q15025 636 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 SLC47A2Q86VL8 602 aa20.67■□□□□ 0.9
VIM-203ENST00000469543 MCF2L2Q86YR7 1114 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms