RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 SLC44A3Q8N4M1 653 aa16.33■□□□□ 0.2
CXCR4-203ENST00000466288 RUBCNQ92622 972 aa16.33■□□□□ 0.2
CXCR4-203ENST00000466288 GLT8D2Q9H1C3 349 aa16.33■□□□□ 0.2
CXCR4-203ENST00000466288 WDR6Q9NNW5 1121 aaKnown RBP16.33■□□□□ 0.2
CXCR4-203ENST00000466288 EPS15L1Q9UBC2 864 aa16.33■□□□□ 0.2
CXCR4-203ENST00000466288 INPP5FQ9Y2H2 1132 aa16.33■□□□□ 0.2
CXCR4-203ENST00000466288 CACNA1BQ00975 2339 aa16.33■□□□□ 0.2
CXCR4-203ENST00000466288 CEP250Q9BV73 2442 aa16.32■□□□□ 0.2
CXCR4-203ENST00000466288 hCG_1984214I3L0E3 225 aa16.32■□□□□ 0.2
CXCR4-203ENST00000466288 SRFP11831 508 aa16.32■□□□□ 0.2
CXCR4-203ENST00000466288 SETQ01105 290 aaPredicted RBP16.32■□□□□ 0.2
CXCR4-203ENST00000466288 SPECC1Q5M775 1068 aa16.32■□□□□ 0.2
CXCR4-203ENST00000466288 PHLDB3Q6NSJ2 640 aa16.32■□□□□ 0.2
CXCR4-203ENST00000466288 ZC3H14Q6PJT7 736 aaKnown RBP16.32■□□□□ 0.2
CXCR4-203ENST00000466288 ZNF280BQ86YH2 543 aa16.32■□□□□ 0.2
CXCR4-203ENST00000466288 ZNF713Q8N859 430 aaPredicted RBP16.32■□□□□ 0.2
CXCR4-203ENST00000466288 CNTNAP3BQ96NU0 1288 aa16.32■□□□□ 0.2
CXCR4-203ENST00000466288 HINFPQ9BQA5 517 aa16.32■□□□□ 0.2
CXCR4-203ENST00000466288 CNTNAP3Q9BZ76 1288 aa16.32■□□□□ 0.2
CXCR4-203ENST00000466288 GCOM2Q9BZD3 368 aaPredicted RBP16.32■□□□□ 0.2
CXCR4-203ENST00000466288 NRBP2Q9NSY0 501 aa16.32■□□□□ 0.2
CXCR4-203ENST00000466288 RBM28Q9NW13 759 aaKnown RBP16.32■□□□□ 0.2
CXCR4-203ENST00000466288 SAMM50Q9Y512 469 aa16.32■□□□□ 0.2
CXCR4-203ENST00000466288 ADAMTS3O15072 1205 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 ZNF623O75123 536 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 SSBP05455 408 aaKnown RBP eCLIP16.31■□□□□ 0.2
CXCR4-203ENST00000466288 SKIP12755 728 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 RFX1P22670 979 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 GBP2P32456 591 aaPredicted RBP16.31■□□□□ 0.2
CXCR4-203ENST00000466288 PRKCEQ02156 737 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 RNASELQ05823 741 aaKnown RBP16.31■□□□□ 0.2
CXCR4-203ENST00000466288 NONOQ15233 471 aaKnown RBP eCLIP16.31■□□□□ 0.2
CXCR4-203ENST00000466288 TARBP2Q15633 366 aaKnown RBP16.31■□□□□ 0.2
CXCR4-203ENST00000466288 TWF2Q6IBS0 349 aaKnown RBP16.31■□□□□ 0.2
CXCR4-203ENST00000466288 APOA5Q6Q788 366 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 CFAP47Q6ZTR5 3102 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 C1orf210Q8IVY1 113 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 NXPE3Q969Y0 559 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 MYADMQ96S97 322 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 RHOBTB2Q9BYZ6 727 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 GBP3Q9H0R5 595 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 MAN1C1Q9NR34 630 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 FAM105AQ9NUU6 356 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 STK39Q9UEW8 545 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 TCEAL9Q9UHQ7 104 aa16.31■□□□□ 0.2
CXCR4-203ENST00000466288 KMT2BQ9UMN6 2715 aaPredicted RBP16.31■□□□□ 0.2
CXCR4-203ENST00000466288 A0A087WZ62 844 aa16.3■□□□□ 0.2
CXCR4-203ENST00000466288 CCDC195A0A1B0GUA6 201 aa16.3■□□□□ 0.2
CXCR4-203ENST00000466288 WDR64B1ANS9 1081 aa16.3■□□□□ 0.2
CXCR4-203ENST00000466288 SLC27A2O14975 620 aa16.3■□□□□ 0.2
CXCR4-203ENST00000466288 UGCGQ16739 394 aa16.3■□□□□ 0.2
CXCR4-203ENST00000466288 SUMF1Q8NBK3 374 aa16.3■□□□□ 0.2
CXCR4-203ENST00000466288 GPR152Q8TDT2 470 aa16.3■□□□□ 0.2
CXCR4-203ENST00000466288 LENG9Q96B70 501 aa16.3■□□□□ 0.2
CXCR4-203ENST00000466288 FDXACB1Q9BRP7 624 aaPredicted RBP16.3■□□□□ 0.2
CXCR4-203ENST00000466288 MRPL17Q9NRX2 175 aaKnown RBP16.3■□□□□ 0.2
CXCR4-203ENST00000466288 SIT1Q9Y3P8 196 aa16.3■□□□□ 0.2
CXCR4-203ENST00000466288 CLUHO75153 1309 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 DDHD2O94830 711 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 GLULP15104 373 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 AFF1P51825 1210 aaKnown RBP16.29■□□□□ 0.2
CXCR4-203ENST00000466288 CDC42EP1Q00587 391 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 RTN1Q16799 776 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 RSPO4Q2I0M5 234 aaPredicted RBP16.29■□□□□ 0.2
CXCR4-203ENST00000466288 PRR16Q569H4 304 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 CYP26C1Q6V0L0 522 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 SYNE3Q6ZMZ3 975 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 MAML2Q8IZL2 1156 aaPredicted RBP16.29■□□□□ 0.2
CXCR4-203ENST00000466288 STAMQ92783 540 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 CEP89Q96ST8 783 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 LSG1Q9H089 658 aaKnown RBP16.29■□□□□ 0.2
CXCR4-203ENST00000466288 ARHGEF3Q9NR81 526 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 DISC1Q9NRI5 854 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 PIN4Q9Y237 131 aaKnown RBP16.29■□□□□ 0.2
CXCR4-203ENST00000466288 GPR179Q6PRD1 2367 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 POTEMA6NI47 508 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 INPPL1O15357 1258 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 RFPL2O75678 378 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 PAPLNO95428 1278 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 ALDH2P05091 517 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 SFPQP23246 707 aaKnown RBP eCLIP16.29■□□□□ 0.2
CXCR4-203ENST00000466288 CIITAP33076 1130 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 POTEGQ6S5H5 508 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 AGMOQ6ZNB7 445 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 RPS6KC1Q96S38 1066 aa16.29■□□□□ 0.2
CXCR4-203ENST00000466288 C2orf16Q68DN1 1984 aa16.28■□□□□ 0.2
CXCR4-203ENST00000466288 IGKV6-21A0A0C4DH24 114 aa16.28■□□□□ 0.2
CXCR4-203ENST00000466288 C2CD2LO14523 706 aa16.28■□□□□ 0.2
CXCR4-203ENST00000466288 TEX28O15482 410 aa16.28■□□□□ 0.2
CXCR4-203ENST00000466288 SOD2P04179 222 aa16.28■□□□□ 0.2
CXCR4-203ENST00000466288 RAB27AP51159 221 aa16.28■□□□□ 0.2
CXCR4-203ENST00000466288 NECTIN1Q15223 517 aa16.28■□□□□ 0.2
CXCR4-203ENST00000466288 CREB3L3Q68CJ9 461 aa16.28■□□□□ 0.2
CXCR4-203ENST00000466288 TAS1R1Q7RTX1 841 aa16.28■□□□□ 0.2
CXCR4-203ENST00000466288 EXOC6Q8TAG9 804 aa16.28■□□□□ 0.2
CXCR4-203ENST00000466288 ZNF707Q96C28 371 aaPredicted RBP16.28■□□□□ 0.2
CXCR4-203ENST00000466288 TMEM175Q9BSA9 504 aa16.28■□□□□ 0.2
CXCR4-203ENST00000466288 FAM217BQ9NTX9 383 aaPredicted RBP16.28■□□□□ 0.2
CXCR4-203ENST00000466288 BRPF3Q9ULD4 1205 aa16.28■□□□□ 0.2
CXCR4-203ENST00000466288 ANHXE9PGG2 379 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms