RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 BRPF3Q9ULD4 1205 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 V9GY48 417 aaPredicted RBP11.05□□□□□ -0.64
USP39-212ENST00000465514 NFASCO94856 1347 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 MTCL1Q9Y4B5 1905 aaKnown RBP11.04□□□□□ -0.64
USP39-212ENST00000465514 SMCO2A6NFE2 343 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 MEIS1O00470 390 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 GPR182O15218 404 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 ZBTB43O43298 467 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 LILRB5O75023 590 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 ATG7O95352 703 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 FOSP01100 380 aaPredicted RBP11.04□□□□□ -0.64
USP39-212ENST00000465514 PMLP29590 882 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 BCAR1P56945 870 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 ITGB3BPQ13352 177 aaPredicted RBP11.04□□□□□ -0.64
USP39-212ENST00000465514 RTN1Q16799 776 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 CLLU1OSQ5K130 101 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 PPP1R18Q6NYC8 613 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 MTHFD1LQ6UB35 978 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 C15orf39Q6ZRI6 1047 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 FAM43BQ6ZT52 329 aaPredicted RBP11.04□□□□□ -0.64
USP39-212ENST00000465514 DHX32Q7L7V1 743 aaKnown RBP11.04□□□□□ -0.64
USP39-212ENST00000465514 FAM228AQ86W67 206 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 TMEM173Q86WV6 379 aaPredicted RBP11.04□□□□□ -0.64
USP39-212ENST00000465514 TEX2Q8IWB9 1127 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 NME8Q8N427 588 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 TMEM169Q96HH4 297 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 MYADMQ96S97 322 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 PPP1R16BQ96T49 567 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 ANO3Q9BYT9 981 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 BCO2Q9BYV7 579 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 EPS15L1Q9UBC2 864 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 IRAK3Q9Y616 596 aa11.04□□□□□ -0.64
USP39-212ENST00000465514 WDR81Q562E7 1941 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 CTSAP10619 480 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 ZNF76P36508 570 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 SREBF1P36956 1147 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 ALDH7A1P49419 539 aaKnown RBP11.03□□□□□ -0.64
USP39-212ENST00000465514 CLCN4P51793 760 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 STARD6P59095 220 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 SHC2P98077 582 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 DSC3Q14574 896 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 ADCK5Q3MIX3 580 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 BMP2KLQ5H9B9 411 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 ODR4Q5SWX8 454 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 PPFIBP1Q86W92 1011 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 SKAP1Q86WV1 359 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 RASEFQ8IZ41 740 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 RNF169Q8NCN4 708 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 SLC2A4RGQ9NR83 387 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 FAM217BQ9NTX9 383 aaPredicted RBP11.03□□□□□ -0.64
USP39-212ENST00000465514 BARHL2Q9NY43 387 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 CLUHO75153 1309 aa11.03□□□□□ -0.64
USP39-212ENST00000465514 ASH1LQ9NR48 2969 aaKnown RBP11.03□□□□□ -0.64
USP39-212ENST00000465514 LOC400499M0QZD8 3231 aa11.02□□□□□ -0.64
USP39-212ENST00000465514 IGKV6D-21A0A0A0MT36 114 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 KLF18A0A0U1RQI7 1052 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 GOLGA8AA7E2F4 631 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 GOLGA8BA8MQT2 603 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 hCG_1984214I3L0E3 225 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 DDX39AO00148 427 aaKnown RBP11.02□□□□□ -0.65
USP39-212ENST00000465514 BACH1O14867 736 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 TBC1D4O60343 1298 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 CCNE2O96020 404 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 PROS1P07225 676 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 KLRC1P26715 233 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 CDC27P30260 824 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 CLK2P49760 499 aaKnown RBP11.02□□□□□ -0.65
USP39-212ENST00000465514 SLC26A2P50443 739 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 POLGP54098 1239 aaPredicted RBP11.02□□□□□ -0.65
USP39-212ENST00000465514 AP3B2Q13367 1082 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 GIT2Q14161 759 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 LPAL2Q16609 132 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 KIZQ2M2Z5 673 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 TSGA10IPQ3SY00 556 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 TSSK4Q6SA08 328 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 ABHD15Q6UXT9 468 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 NIPA1Q7RTP0 329 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 ZNF713Q8N859 430 aaPredicted RBP11.02□□□□□ -0.65
USP39-212ENST00000465514 ST13P5Q8NFI4 369 aaPredicted RBP11.02□□□□□ -0.65
USP39-212ENST00000465514 HELQQ8TDG4 1101 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 BCL7CQ8WUZ0 217 aaPredicted RBP11.02□□□□□ -0.65
USP39-212ENST00000465514 STAMQ92783 540 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 NELL1Q92832 810 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 NXPE3Q969Y0 559 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 OSMRQ99650 979 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 GLT8D2Q9H1C3 349 aa11.02□□□□□ -0.65
USP39-212ENST00000465514 WDR6Q9NNW5 1121 aaKnown RBP11.02□□□□□ -0.65
USP39-212ENST00000465514 MTF2Q9Y483 593 aaPredicted RBP11.02□□□□□ -0.65
USP39-212ENST00000465514 GREB1Q4ZG55 1949 aa11.01□□□□□ -0.65
USP39-212ENST00000465514 ITPR1Q14643 2758 aa11.01□□□□□ -0.65
USP39-212ENST00000465514 AKAP13Q12802 2813 aa11.01□□□□□ -0.65
USP39-212ENST00000465514 SMG1Q96Q15 3661 aaKnown RBP11.01□□□□□ -0.65
USP39-212ENST00000465514 KANSL1LA0AUZ9 987 aa11.01□□□□□ -0.65
USP39-212ENST00000465514 SOBPA7XYQ1 873 aa11.01□□□□□ -0.65
USP39-212ENST00000465514 FAM86B1E9PN63 330 aa11.01□□□□□ -0.65
USP39-212ENST00000465514 DHX15O43143 795 aaKnown RBP11.01□□□□□ -0.65
USP39-212ENST00000465514 HBP1O60381 514 aa11.01□□□□□ -0.65
USP39-212ENST00000465514 ZC3H11AO75152 810 aaKnown RBP eCLIP11.01□□□□□ -0.65
USP39-212ENST00000465514 FAM86B2P0C5J1 330 aa11.01□□□□□ -0.65
USP39-212ENST00000465514 KLRC2P26717 231 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms