RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 FAM105AQ9NUU6 356 aa25.39■■□□□ 1.66
USP4-208ENST00000464168 TBC1D13Q9NVG8 400 aa25.39■■□□□ 1.66
USP4-208ENST00000464168 IRAK3Q9Y616 596 aa25.39■■□□□ 1.66
USP4-208ENST00000464168 C2CD4DB7Z1M9 353 aa25.38■■□□□ 1.65
USP4-208ENST00000464168 EML1O00423 815 aa25.38■■□□□ 1.65
USP4-208ENST00000464168 OFD1O75665 1012 aa25.38■■□□□ 1.65
USP4-208ENST00000464168 PDGFBP01127 241 aaPredicted RBP25.38■■□□□ 1.65
USP4-208ENST00000464168 GALTP07902 379 aa25.38■■□□□ 1.65
USP4-208ENST00000464168 WEE2P0C1S8 567 aa25.38■■□□□ 1.65
USP4-208ENST00000464168 POLGP54098 1239 aaPredicted RBP25.38■■□□□ 1.65
USP4-208ENST00000464168 PLA2G4FQ68DD2 849 aa25.38■■□□□ 1.65
USP4-208ENST00000464168 GALNT17Q6IS24 598 aa25.38■■□□□ 1.65
USP4-208ENST00000464168 CATSPER4Q7RTX7 472 aa25.38■■□□□ 1.65
USP4-208ENST00000464168 C12orf76Q8N812 135 aaPredicted RBP25.38■■□□□ 1.65
USP4-208ENST00000464168 BCL7CQ8WUZ0 217 aaPredicted RBP25.38■■□□□ 1.65
USP4-208ENST00000464168 IFT122Q9HBG6 1241 aa25.38■■□□□ 1.65
USP4-208ENST00000464168 DDX25Q9UHL0 483 aaKnown RBP25.38■■□□□ 1.65
USP4-208ENST00000464168 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP25.37■■□□□ 1.65
USP4-208ENST00000464168 CPLX1O14810 134 aa25.37■■□□□ 1.65
USP4-208ENST00000464168 SLC37A4O43826 429 aa25.37■■□□□ 1.65
USP4-208ENST00000464168 CTSAP10619 480 aa25.37■■□□□ 1.65
USP4-208ENST00000464168 MTHFRP42898 656 aa25.37■■□□□ 1.65
USP4-208ENST00000464168 NONOQ15233 471 aaKnown RBP eCLIP25.37■■□□□ 1.65
USP4-208ENST00000464168 INF2Q27J81 1249 aa25.37■■□□□ 1.65
USP4-208ENST00000464168 RARS2Q5T160 578 aaKnown RBP25.37■■□□□ 1.65
USP4-208ENST00000464168 KANK3Q6NY19 840 aa25.37■■□□□ 1.65
USP4-208ENST00000464168 FAM177A1Q8N128 213 aaPredicted RBP25.37■■□□□ 1.65
USP4-208ENST00000464168 SLC22A17Q8WUG5 538 aa25.37■■□□□ 1.65
USP4-208ENST00000464168 RIPOR3Q96MK2 946 aa25.37■■□□□ 1.65
USP4-208ENST00000464168 NLRP4Q96MN2 994 aa25.37■■□□□ 1.65
USP4-208ENST00000464168 CYP26B1Q9NR63 512 aa25.37■■□□□ 1.65
USP4-208ENST00000464168 INPP5FQ9Y2H2 1132 aa25.37■■□□□ 1.65
USP4-208ENST00000464168 CYP46A1Q9Y6A2 500 aa25.37■■□□□ 1.65
USP4-208ENST00000464168 CARNS1A5YM72 827 aa25.36■■□□□ 1.65
USP4-208ENST00000464168 EPCAMP16422 314 aa25.36■■□□□ 1.65
USP4-208ENST00000464168 NPEPPSP55786 919 aa25.36■■□□□ 1.65
USP4-208ENST00000464168 ZNF579Q8NAF0 562 aaKnown RBP25.36■■□□□ 1.65
USP4-208ENST00000464168 JPH2Q9BR39 696 aaPredicted RBP25.36■■□□□ 1.65
USP4-208ENST00000464168 DZANK1Q9NVP4 752 aa25.36■■□□□ 1.65
USP4-208ENST00000464168 DNAJB4Q9UDY4 337 aa25.36■■□□□ 1.65
USP4-208ENST00000464168 VAV3Q9UKW4 847 aa25.36■■□□□ 1.65
USP4-208ENST00000464168 SORCS3Q9UPU3 1222 aa25.36■■□□□ 1.65
USP4-208ENST00000464168 KMT2EQ8IZD2 1858 aa25.36■■□□□ 1.65
USP4-208ENST00000464168 MYO10Q9HD67 2058 aa25.35■■□□□ 1.65
USP4-208ENST00000464168 B4GALT3O60512 393 aa25.35■■□□□ 1.65
USP4-208ENST00000464168 BRD1O95696 1058 aa25.35■■□□□ 1.65
USP4-208ENST00000464168 QARSP47897 775 aaKnown RBP25.35■■□□□ 1.65
USP4-208ENST00000464168 RAB27AP51159 221 aa25.35■■□□□ 1.65
USP4-208ENST00000464168 RNASELQ05823 741 aaKnown RBP25.35■■□□□ 1.65
USP4-208ENST00000464168 KRT25Q7Z3Z0 450 aa25.35■■□□□ 1.65
USP4-208ENST00000464168 UBALD2Q8IYN6 164 aa25.35■■□□□ 1.65
USP4-208ENST00000464168 TMEM87AQ8NBN3 555 aa25.35■■□□□ 1.65
USP4-208ENST00000464168 VN1R3Q9BXE9 311 aa25.35■■□□□ 1.65
USP4-208ENST00000464168 KCNJ14Q9UNX9 436 aa25.35■■□□□ 1.65
USP4-208ENST00000464168 PCDHB2Q9Y5E7 798 aa25.35■■□□□ 1.65
USP4-208ENST00000464168 SLC11A1P49279 550 aa25.34■■□□□ 1.65
USP4-208ENST00000464168 STK3Q13188 491 aa25.34■■□□□ 1.65
USP4-208ENST00000464168 PPP2R5CQ13362 524 aa25.34■■□□□ 1.65
USP4-208ENST00000464168 MTMR3Q13615 1198 aa25.34■■□□□ 1.65
USP4-208ENST00000464168 GIT2Q14161 759 aa25.34■■□□□ 1.65
USP4-208ENST00000464168 LETM2Q2VYF4 491 aa25.34■■□□□ 1.65
USP4-208ENST00000464168 AGMOQ6ZNB7 445 aa25.34■■□□□ 1.65
USP4-208ENST00000464168 ZNF280BQ86YH2 543 aa25.34■■□□□ 1.65
USP4-208ENST00000464168 FAM20AQ96MK3 541 aa25.34■■□□□ 1.65
USP4-208ENST00000464168 GBP3Q9H0R5 595 aa25.34■■□□□ 1.65
USP4-208ENST00000464168 KCNMB3Q9NPA1 279 aa25.34■■□□□ 1.65
USP4-208ENST00000464168 AGPAT5Q9NUQ2 364 aa25.34■■□□□ 1.65
USP4-208ENST00000464168 WRAP73Q9P2S5 460 aaPredicted RBP25.34■■□□□ 1.65
USP4-208ENST00000464168 COL4A3BPQ9Y5P4 624 aa25.34■■□□□ 1.65
USP4-208ENST00000464168 EPB41L2O43491 1005 aaKnown RBP25.33■■□□□ 1.65
USP4-208ENST00000464168 ATAT1Q5SQI0 421 aa25.33■■□□□ 1.65
USP4-208ENST00000464168 KIAA1841Q6NSI8 718 aa25.33■■□□□ 1.65
USP4-208ENST00000464168 MRPL10Q7Z7H8 261 aaKnown RBP25.33■■□□□ 1.65
USP4-208ENST00000464168 FEZF2Q8TBJ5 459 aa25.33■■□□□ 1.65
USP4-208ENST00000464168 PRPF31Q8WWY3 499 aaKnown RBP25.33■■□□□ 1.65
USP4-208ENST00000464168 PGBD4Q96DM1 585 aa25.33■■□□□ 1.65
USP4-208ENST00000464168 CFAP54Q96N23 3096 aa25.33■■□□□ 1.65
USP4-208ENST00000464168 TM6SF1Q9BZW5 370 aa25.33■■□□□ 1.65
USP4-208ENST00000464168 SMOC2Q9H3U7 446 aa25.33■■□□□ 1.65
USP4-208ENST00000464168 MINDY3Q9H8M7 445 aa25.33■■□□□ 1.65
USP4-208ENST00000464168 P4HBP07237 508 aaKnown RBP25.32■■□□□ 1.64
USP4-208ENST00000464168 AFF1P51825 1210 aaKnown RBP25.32■■□□□ 1.64
USP4-208ENST00000464168 PTPN14Q15678 1187 aa25.32■■□□□ 1.64
USP4-208ENST00000464168 CPLX2Q6PUV4 134 aaKnown RBP25.32■■□□□ 1.64
USP4-208ENST00000464168 ZDHHC14Q8IZN3 488 aa25.32■■□□□ 1.64
USP4-208ENST00000464168 SLC7A3Q8WY07 619 aa25.32■■□□□ 1.64
USP4-208ENST00000464168 TMEM143Q96AN5 459 aa25.32■■□□□ 1.64
USP4-208ENST00000464168 CEP170P1Q96L14 293 aa25.32■■□□□ 1.64
USP4-208ENST00000464168 PHF20Q9BVI0 1012 aa25.32■■□□□ 1.64
USP4-208ENST00000464168 DHX33Q9H6R0 707 aaKnown RBP25.32■■□□□ 1.64
USP4-208ENST00000464168 FAM86C1Q9NVL1 165 aa25.32■■□□□ 1.64
USP4-208ENST00000464168 LIMD1Q9UGP4 676 aa25.32■■□□□ 1.64
USP4-208ENST00000464168 DDHD2O94830 711 aa25.31■■□□□ 1.64
USP4-208ENST00000464168 ASGR2P07307 311 aa25.31■■□□□ 1.64
USP4-208ENST00000464168 SRGAP2CP0DJJ0 459 aa25.31■■□□□ 1.64
USP4-208ENST00000464168 HOXA11P31270 313 aaPredicted RBP25.31■■□□□ 1.64
USP4-208ENST00000464168 PPP4R3AQ6IN85 833 aa25.31■■□□□ 1.64
USP4-208ENST00000464168 SLKQ9H2G2 1235 aaPredicted RBP25.31■■□□□ 1.64
USP4-208ENST00000464168 DBR1Q9UK59 544 aaKnown RBP25.31■■□□□ 1.64
USP4-208ENST00000464168 USTQ9Y2C2 406 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms