RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 MYOCDQ8IZQ8 938 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 PRIMPOLQ96LW4 560 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 ADAM2Q99965 735 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 REEP2Q9BRK0 252 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 ZBED2Q9BTP6 218 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 ZHX3Q9H4I2 956 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 PARVGQ9HBI0 331 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 KMT5AQ9NQR1 393 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 PRMT7Q9NVM4 692 aaPredicted RBP21.86■■□□□ 1.09
COL9A3-204ENST00000463487 PIN4Q9Y237 131 aaKnown RBP21.86■■□□□ 1.09
COL9A3-204ENST00000463487 ENPP3O14638 875 aa21.85■■□□□ 1.09
COL9A3-204ENST00000463487 CSDE1O75534 798 aaKnown RBP21.85■■□□□ 1.09
COL9A3-204ENST00000463487 STAG3L1P0CL83 205 aa21.85■■□□□ 1.09
COL9A3-204ENST00000463487 FGFR4P22455 802 aa21.85■■□□□ 1.09
COL9A3-204ENST00000463487 SYKP43405 635 aa21.85■■□□□ 1.09
COL9A3-204ENST00000463487 RAB30Q15771 203 aa21.85■■□□□ 1.09
COL9A3-204ENST00000463487 E2F4Q16254 413 aa21.85■■□□□ 1.09
COL9A3-204ENST00000463487 TCTN1Q2MV58 587 aa21.85■■□□□ 1.09
COL9A3-204ENST00000463487 ARSHQ5FYA8 562 aa21.85■■□□□ 1.09
COL9A3-204ENST00000463487 HABP4Q5JVS0 413 aaKnown RBP21.85■■□□□ 1.09
COL9A3-204ENST00000463487 FSIP1Q8NA03 581 aa21.85■■□□□ 1.09
COL9A3-204ENST00000463487 SLC17A8Q8NDX2 589 aa21.85■■□□□ 1.09
COL9A3-204ENST00000463487 LRRC15Q8TF66 581 aa21.85■■□□□ 1.09
COL9A3-204ENST00000463487 DDX12PQ92771 950 aa21.85■■□□□ 1.09
COL9A3-204ENST00000463487 RGS18Q9NS28 235 aa21.85■■□□□ 1.09
COL9A3-204ENST00000463487 AGPAT5Q9NUQ2 364 aa21.85■■□□□ 1.09
COL9A3-204ENST00000463487 A0A1B0GVL5 298 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 SKIP12755 728 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 NPTX2P47972 431 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 MBTD1Q05BQ5 628 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 MAPK7Q13164 816 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 TMEM132AQ24JP5 1023 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 TWF2Q6IBS0 349 aaKnown RBP21.84■■□□□ 1.09
COL9A3-204ENST00000463487 SLC24A5Q71RS6 500 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 HERC6Q8IVU3 1022 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 DAW1Q8N136 415 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 MYCT1Q8N699 235 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 SPIRE2Q8WWL2 714 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 BSNDQ8WZ55 320 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 CCDC51Q96ER9 411 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 TMX1Q9H3N1 280 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 SEL1LQ9UBV2 794 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 MSRAQ9UJ68 235 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 LRFN2Q9ULH4 789 aa21.84■■□□□ 1.09
COL9A3-204ENST00000463487 NPHP3-ACAD11A0A0J9YXS1 232 aa21.83■■□□□ 1.09
COL9A3-204ENST00000463487 K7ERI5 159 aa21.83■■□□□ 1.09
COL9A3-204ENST00000463487 GAP43P17677 238 aa21.83■■□□□ 1.09
COL9A3-204ENST00000463487 DEFB103AP81534 67 aa21.83■■□□□ 1.09
COL9A3-204ENST00000463487 GIT2Q14161 759 aa21.83■■□□□ 1.09
COL9A3-204ENST00000463487 TPRNQ4KMQ1 711 aa21.83■■□□□ 1.09
COL9A3-204ENST00000463487 NOTUMQ6P988 496 aa21.83■■□□□ 1.09
COL9A3-204ENST00000463487 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.83■■□□□ 1.09
COL9A3-204ENST00000463487 DYMQ7RTS9 669 aa21.83■■□□□ 1.09
COL9A3-204ENST00000463487 NPAS4Q8IUM7 802 aa21.83■■□□□ 1.09
COL9A3-204ENST00000463487 MINDY3Q9H8M7 445 aa21.83■■□□□ 1.09
COL9A3-204ENST00000463487 POLD4Q9HCU8 107 aa21.83■■□□□ 1.09
COL9A3-204ENST00000463487 KBTBD4Q9NVX7 518 aa21.83■■□□□ 1.09
COL9A3-204ENST00000463487 MYH11P35749 1972 aa21.83■■□□□ 1.08
COL9A3-204ENST00000463487 FAM237AA0A1B0GTK4 181 aa21.82■■□□□ 1.08
COL9A3-204ENST00000463487 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.82■■□□□ 1.08
COL9A3-204ENST00000463487 MYMKA6NI61 221 aa21.82■■□□□ 1.08
COL9A3-204ENST00000463487 SFI1A8K8P3 1242 aa21.82■■□□□ 1.08
COL9A3-204ENST00000463487 SLFN14P0C7P3 912 aa21.82■■□□□ 1.08
COL9A3-204ENST00000463487 SARSP49591 514 aaKnown RBP21.82■■□□□ 1.08
COL9A3-204ENST00000463487 RAB27AP51159 221 aa21.82■■□□□ 1.08
COL9A3-204ENST00000463487 ZNF131P52739 623 aa21.82■■□□□ 1.08
COL9A3-204ENST00000463487 CACNB1Q02641 598 aaPredicted RBP21.82■■□□□ 1.08
COL9A3-204ENST00000463487 STRN3Q13033 797 aa21.82■■□□□ 1.08
COL9A3-204ENST00000463487 FAM187BQ17R55 369 aa21.82■■□□□ 1.08
COL9A3-204ENST00000463487 PPP4R3CPQ6ZMV5 832 aa21.82■■□□□ 1.08
COL9A3-204ENST00000463487 APBB1IPQ7Z5R6 666 aaPredicted RBP21.82■■□□□ 1.08
COL9A3-204ENST00000463487 CCDC65Q8IXS2 484 aa21.82■■□□□ 1.08
COL9A3-204ENST00000463487 TOP1MTQ969P6 601 aa21.82■■□□□ 1.08
COL9A3-204ENST00000463487 NTPCRQ9BSD7 190 aaKnown RBP21.82■■□□□ 1.08
COL9A3-204ENST00000463487 HPSEQ9Y251 543 aa21.82■■□□□ 1.08
COL9A3-204ENST00000463487 PCDHB7Q9Y5E2 793 aa21.82■■□□□ 1.08
COL9A3-204ENST00000463487 PCDHA11Q9Y5I1 949 aa21.82■■□□□ 1.08
COL9A3-204ENST00000463487 TLL1O43897 1013 aa21.81■■□□□ 1.08
COL9A3-204ENST00000463487 TSPAN1O60635 241 aa21.81■■□□□ 1.08
COL9A3-204ENST00000463487 GJB5O95377 273 aa21.81■■□□□ 1.08
COL9A3-204ENST00000463487 PRKCBP05771 671 aa21.81■■□□□ 1.08
COL9A3-204ENST00000463487 IDEP14735 1019 aa21.81■■□□□ 1.08
COL9A3-204ENST00000463487 LIG1P18858 919 aa21.81■■□□□ 1.08
COL9A3-204ENST00000463487 NDUFA8P51970 172 aa21.81■■□□□ 1.08
COL9A3-204ENST00000463487 PRPF4BQ13523 1007 aaKnown RBP21.81■■□□□ 1.08
COL9A3-204ENST00000463487 DSC3Q14574 896 aa21.81■■□□□ 1.08
COL9A3-204ENST00000463487 FAM178BQ8IXR5 827 aa21.81■■□□□ 1.08
COL9A3-204ENST00000463487 YME1L1Q96TA2 773 aa21.81■■□□□ 1.08
COL9A3-204ENST00000463487 TRAIPQ9BWF2 469 aa21.81■■□□□ 1.08
COL9A3-204ENST00000463487 TMEM134Q9H6X4 195 aa21.81■■□□□ 1.08
COL9A3-204ENST00000463487 TRIOBPQ9H2D6 2365 aa21.8■■□□□ 1.08
COL9A3-204ENST00000463487 SLC16A4O15374 487 aa21.8■■□□□ 1.08
COL9A3-204ENST00000463487 TRAK2O60296 914 aa21.8■■□□□ 1.08
COL9A3-204ENST00000463487 MGEA5O60502 916 aa21.8■■□□□ 1.08
COL9A3-204ENST00000463487 UPP2O95045 317 aa21.8■■□□□ 1.08
COL9A3-204ENST00000463487 MYL1P05976 194 aa21.8■■□□□ 1.08
COL9A3-204ENST00000463487 HACE1Q8IYU2 909 aa21.8■■□□□ 1.08
COL9A3-204ENST00000463487 LINC01599Q8WXQ3 324 aa21.8■■□□□ 1.08
COL9A3-204ENST00000463487 GBP4Q96PP9 640 aa21.8■■□□□ 1.08
COL9A3-204ENST00000463487 RAD9AQ99638 391 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms