RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ZNF233A6NK53 670 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 EML1O00423 815 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 CYP26A1O43174 497 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 CCND2P30279 289 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 YWHABP31946 246 aaKnown RBP12.53□□□□□ -0.4
NPHP4-204ENST00000460696 CDK17Q00537 523 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 BFSP1Q12934 665 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 PASD1Q8IV76 773 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 DNAJC19Q96DA6 116 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 PRM3Q9NNZ6 103 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 KCNH7Q9NS40 1196 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 CNOT8Q9UFF9 292 aaKnown RBP12.53□□□□□ -0.4
NPHP4-204ENST00000460696 ANAPC7Q9UJX3 599 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 TRPC6Q9Y210 931 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 TRPM3Q9HCF6 1732 aaPredicted RBP12.53□□□□□ -0.4
NPHP4-204ENST00000460696 ZSCAN5CA6NGD5 496 aaPredicted RBP12.53□□□□□ -0.4
NPHP4-204ENST00000460696 TTI1O43156 1089 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 IGBP1P78318 339 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 HDLBPQ00341 1268 aaKnown RBP12.53□□□□□ -0.4
NPHP4-204ENST00000460696 CRY2Q49AN0 593 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 TAOK1Q7L7X3 1001 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 ZBTB33Q86T24 672 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 DPP9Q86TI2 863 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 MMGT1Q8N4V1 131 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 STK33Q9BYT3 514 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 VIPAS39Q9H9C1 493 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 PLCB1Q9NQ66 1216 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 RAB21Q9UL25 225 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 ALS2Q96Q42 1657 aa12.52□□□□□ -0.4
NPHP4-204ENST00000460696 COL14A1Q05707 1796 aaKnown RBP12.52□□□□□ -0.4
NPHP4-204ENST00000460696 ZBTB22O15209 634 aa12.52□□□□□ -0.4
NPHP4-204ENST00000460696 THAP12O43422 761 aa12.52□□□□□ -0.4
NPHP4-204ENST00000460696 PPP1R11O60927 126 aaPredicted RBP12.52□□□□□ -0.4
NPHP4-204ENST00000460696 KRT15P19012 456 aa12.52□□□□□ -0.4
NPHP4-204ENST00000460696 SSTR3P32745 418 aaPredicted RBP12.52□□□□□ -0.4
NPHP4-204ENST00000460696 COPB2P35606 906 aa12.52□□□□□ -0.4
NPHP4-204ENST00000460696 GTF2A1P52655 376 aaPredicted RBP12.52□□□□□ -0.4
NPHP4-204ENST00000460696 MTMR2Q13614 643 aa12.52□□□□□ -0.4
NPHP4-204ENST00000460696 COG2Q14746 738 aa12.52□□□□□ -0.4
NPHP4-204ENST00000460696 LRRC55Q6ZSA7 311 aa12.52□□□□□ -0.4
NPHP4-204ENST00000460696 ZNF571Q7Z3V5 609 aaPredicted RBP12.52□□□□□ -0.4
NPHP4-204ENST00000460696 CACNA2D3Q8IZS8 1091 aa12.52□□□□□ -0.4
NPHP4-204ENST00000460696 OR2W6PQ8NHA6 318 aa12.52□□□□□ -0.4
NPHP4-204ENST00000460696 TRPM4Q8TD43 1214 aa12.52□□□□□ -0.4
NPHP4-204ENST00000460696 ZNF668Q96K58 619 aaPredicted RBP12.52□□□□□ -0.4
NPHP4-204ENST00000460696 RNPC3Q96LT9 517 aaKnown RBP12.52□□□□□ -0.4
NPHP4-204ENST00000460696 HEMGNQ9BXL5 484 aa12.52□□□□□ -0.4
NPHP4-204ENST00000460696 FAM198AQ9UFP1 575 aa12.52□□□□□ -0.4
NPHP4-204ENST00000460696 COL16A1Q07092 1604 aaPredicted RBP12.52□□□□□ -0.41
NPHP4-204ENST00000460696 GRID2IPA4D2P6 1211 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 CTNND1O60716 968 aaKnown RBP12.52□□□□□ -0.41
NPHP4-204ENST00000460696 TRPA1O75762 1119 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 ALCAMQ13740 583 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 BAATQ14032 418 aaPredicted RBP12.52□□□□□ -0.41
NPHP4-204ENST00000460696 TAF1CQ15572 869 aaPredicted RBP12.52□□□□□ -0.41
NPHP4-204ENST00000460696 GIMAP7Q8NHV1 300 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.52□□□□□ -0.41
NPHP4-204ENST00000460696 POLR3CQ9BUI4 534 aaPredicted RBP12.52□□□□□ -0.41
NPHP4-204ENST00000460696 CELF4Q9BZC1 486 aaKnown RBP12.52□□□□□ -0.41
NPHP4-204ENST00000460696 AGPAT3Q9NRZ7 376 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 FBXL5Q9UKA1 691 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 SLC16A3O15427 465 aaKnown RBP12.52□□□□□ -0.41
NPHP4-204ENST00000460696 MARK3P27448 753 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 PSMC5P62195 406 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 DACT2Q5SW24 774 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 APOBEC3FQ8IUX4 373 aaKnown RBP12.52□□□□□ -0.41
NPHP4-204ENST00000460696 NEK9Q8TD19 979 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 CNKSR2Q8WXI2 1034 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 AGPAT1Q99943 283 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 PLCD4Q9BRC7 762 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 TRIM51Q9BSJ1 452 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 KIFC3Q9BVG8 833 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 MAK16Q9BXY0 300 aaKnown RBP12.52□□□□□ -0.41
NPHP4-204ENST00000460696 FGFBP2Q9BYJ0 223 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 UNC45AQ9H3U1 944 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 VPS37BQ9H9H4 285 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 GPRC5CQ9NQ84 441 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 HSPBP1Q9NZL4 362 aa12.52□□□□□ -0.41
NPHP4-204ENST00000460696 INO80B-WBP1J3KQ70 363 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 PSAPP07602 524 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 TMEM191BP0C7N4 346 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 SRGAP2CP0DJJ0 459 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 TFAMQ00059 246 aaKnown RBP12.51□□□□□ -0.41
NPHP4-204ENST00000460696 GUCY1A3Q02108 690 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 GKAP1Q5VSY0 366 aaPredicted RBP12.51□□□□□ -0.41
NPHP4-204ENST00000460696 CYP4F22Q6NT55 531 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 GPATCH11Q8N954 259 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 SLC30A5Q8TAD4 765 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 GMCL1Q96IK5 515 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 ZIM3Q96PE6 472 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 MXRA8Q9BRK3 442 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 TLR10Q9BXR5 811 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 INO80BQ9C086 356 aaPredicted RBP12.51□□□□□ -0.41
NPHP4-204ENST00000460696 IQCGQ9H095 443 aaKnown RBP12.51□□□□□ -0.41
NPHP4-204ENST00000460696 RPAP3Q9H6T3 665 aaPredicted RBP12.51□□□□□ -0.41
NPHP4-204ENST00000460696 NXF1Q9UBU9 619 aaKnown RBP12.51□□□□□ -0.41
NPHP4-204ENST00000460696 KCNG1Q9UIX4 513 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 H0YCG3 227 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 NFKBIEO00221 500 aa12.51□□□□□ -0.41
NPHP4-204ENST00000460696 MEIS2O14770 477 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms