RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 CCL23P55773 120 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 POU5F1BQ06416 359 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 EHHADHQ08426 723 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 ISM2Q6H9L7 571 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 TRAF7Q6Q0C0 670 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 HAUS6Q7Z4H7 955 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 SRGAP1Q7Z6B7 1085 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 SLC17A8Q8NDX2 589 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 TMEM161BQ8NDZ6 487 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 SPATA20Q8TB22 786 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 TMEM40Q8WWA1 233 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 DPF3Q92784 378 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 TRIM43Q96BQ3 446 aaPredicted RBP11.21□□□□□ -0.61
UPF2-204ENST00000460569 SCLYQ96I15 445 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 FIZ1Q96SL8 496 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 FGFBP2Q9BYJ0 223 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 INO80BQ9C086 356 aaPredicted RBP11.21□□□□□ -0.61
UPF2-204ENST00000460569 WNT8AQ9H1J5 351 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 IFT122Q9HBG6 1241 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 SLC39A2Q9NP94 309 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 KCNG1Q9UIX4 513 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 MAN1B1Q9UKM7 699 aa11.21□□□□□ -0.61
UPF2-204ENST00000460569 K7ERI5 159 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 CSDE1O75534 798 aaKnown RBP11.2□□□□□ -0.62
UPF2-204ENST00000460569 RPS6KA5O75582 802 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 ERLIN2O94905 339 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 TIMP1P01033 207 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 PRKCBP05771 671 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 IQCF3P0C7M6 154 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 MAPTP10636 758 aaKnown RBP11.2□□□□□ -0.62
UPF2-204ENST00000460569 FGFR4P22455 802 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 SFPQP23246 707 aaKnown RBP eCLIP11.2□□□□□ -0.62
UPF2-204ENST00000460569 EIF4BP23588 611 aaKnown RBP11.2□□□□□ -0.62
UPF2-204ENST00000460569 SARSP49591 514 aaKnown RBP11.2□□□□□ -0.62
UPF2-204ENST00000460569 CASP5P51878 434 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 EFNA5P52803 228 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 MBTD1Q05BQ5 628 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 STRN3Q13033 797 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 PSMD2Q13200 908 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 ALCAMQ13740 583 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 MBTPS1Q14703 1052 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 ZC2HC1CQ53FD0 456 aaPredicted RBP11.2□□□□□ -0.62
UPF2-204ENST00000460569 FBXO47Q5MNV8 452 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 NT5DC1Q5TFE4 455 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 STXBP4Q6ZWJ1 553 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 CATSPER4Q7RTX7 472 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 IFNLR1Q8IU57 520 aaPredicted RBP11.2□□□□□ -0.62
UPF2-204ENST00000460569 GLIS3Q8NEA6 775 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 NTPCRQ9BSD7 190 aaKnown RBP11.2□□□□□ -0.62
UPF2-204ENST00000460569 NFKBIZQ9BYH8 718 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 MINDY3Q9H8M7 445 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 ZMYND8Q9ULU4 1186 aaPredicted RBP11.2□□□□□ -0.62
UPF2-204ENST00000460569 GDAQ9Y2T3 454 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 NOC2LQ9Y3T9 749 aaKnown RBP11.2□□□□□ -0.62
UPF2-204ENST00000460569 DNAH12Q6ZR08 3092 aa11.2□□□□□ -0.62
UPF2-204ENST00000460569 UBE4BO95155 1302 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 RBAK-RBAKDNI3L0D1 243 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 EIF3DO15371 548 aaKnown RBP eCLIP11.19□□□□□ -0.62
UPF2-204ENST00000460569 PRPF6O94906 941 aaKnown RBP11.19□□□□□ -0.62
UPF2-204ENST00000460569 SYN1P17600 705 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 SCP2P22307 547 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 ITGB8P26012 769 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 CD52P31358 61 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 ABCD1P33897 745 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 STK4Q13043 487 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 PAK2Q13177 524 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 MORC3Q14149 939 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 LPIN1Q14693 890 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 MAPK6Q16659 721 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 TMEM132AQ24JP5 1023 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 ZNF658Q5TYW1 1059 aaPredicted RBP11.19□□□□□ -0.62
UPF2-204ENST00000460569 RBM43Q6ZSC3 357 aaKnown RBP11.19□□□□□ -0.62
UPF2-204ENST00000460569 TSHZ1Q6ZSZ6 1077 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 TAS1R3Q7RTX0 852 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 ZNF720Q7Z2F6 126 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 FAM228AQ86W67 206 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 SMYD4Q8IYR2 804 aaPredicted RBP11.19□□□□□ -0.62
UPF2-204ENST00000460569 TRIML1Q8N9V2 468 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 USP38Q8NB14 1042 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 KIAA0895Q8NCT3 520 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 HVCN1Q96D96 273 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 BICD1Q96G01 975 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 OSBPL7Q9BZF2 842 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 CCDC113Q9H0I3 377 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 ST6GALNAC4Q9H4F1 302 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 TMEM134Q9H6X4 195 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 PRMT7Q9NVM4 692 aaPredicted RBP11.19□□□□□ -0.62
UPF2-204ENST00000460569 PCDH10Q9P2E7 1040 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 TBX20Q9UMR3 447 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 PCDHB13Q9Y5F0 798 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 SQORQ9Y6N5 450 aa11.19□□□□□ -0.62
UPF2-204ENST00000460569 B4GALT5O43286 388 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 NBNO60934 754 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 PPP1R37O75864 691 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 PARNO95453 639 aaKnown RBP11.18□□□□□ -0.62
UPF2-204ENST00000460569 RFC2P35250 354 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 GTF2BQ00403 316 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 NFX1Q12986 1120 aaKnown RBP11.18□□□□□ -0.62
UPF2-204ENST00000460569 L1TD1Q5T7N2 865 aaKnown RBP11.18□□□□□ -0.62
UPF2-204ENST00000460569 MFSD5Q6N075 450 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms