RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 ITGB1P05556 798 aa25.53■■□□□ 1.68
PTPN4-208ENST00000460289 PDCP20941 246 aa25.53■■□□□ 1.68
PTPN4-208ENST00000460289 AXLP30530 894 aa25.53■■□□□ 1.68
PTPN4-208ENST00000460289 TFF2Q03403 129 aa25.53■■□□□ 1.68
PTPN4-208ENST00000460289 KRT79Q5XKE5 535 aa25.53■■□□□ 1.68
PTPN4-208ENST00000460289 PADI6Q6TGC4 694 aa25.53■■□□□ 1.68
PTPN4-208ENST00000460289 PGBD4Q96DM1 585 aa25.53■■□□□ 1.68
PTPN4-208ENST00000460289 MRPL9Q9BYD2 267 aaKnown RBP25.53■■□□□ 1.68
PTPN4-208ENST00000460289 NFKBIZQ9BYH8 718 aa25.53■■□□□ 1.68
PTPN4-208ENST00000460289 POLR3FQ9H1D9 316 aaPredicted RBP25.53■■□□□ 1.68
PTPN4-208ENST00000460289 CWH43Q9H720 699 aa25.53■■□□□ 1.68
PTPN4-208ENST00000460289 ARID2Q68CP9 1835 aa25.53■■□□□ 1.68
PTPN4-208ENST00000460289 FNDC1Q4ZHG4 1894 aaPredicted RBP25.52■■□□□ 1.68
PTPN4-208ENST00000460289 NCK2O43639 380 aa25.52■■□□□ 1.68
PTPN4-208ENST00000460289 ATF7P17544 494 aaPredicted RBP25.52■■□□□ 1.68
PTPN4-208ENST00000460289 GLRA2P23416 452 aa25.52■■□□□ 1.68
PTPN4-208ENST00000460289 HOXA11P31270 313 aaPredicted RBP25.52■■□□□ 1.68
PTPN4-208ENST00000460289 ATP2C1P98194 919 aaPredicted RBP25.52■■□□□ 1.68
PTPN4-208ENST00000460289 CAPSQ13938 189 aa25.52■■□□□ 1.68
PTPN4-208ENST00000460289 TCEAL5Q5H9L2 206 aa25.52■■□□□ 1.68
PTPN4-208ENST00000460289 CLLU1OSQ5K130 101 aa25.52■■□□□ 1.68
PTPN4-208ENST00000460289 SNX29Q8TEQ0 813 aa25.52■■□□□ 1.68
PTPN4-208ENST00000460289 KIAA1024Q9UPX6 916 aa25.52■■□□□ 1.68
PTPN4-208ENST00000460289 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP25.51■■□□□ 1.67
PTPN4-208ENST00000460289 INO80B-WBP1J3KQ70 363 aa25.51■■□□□ 1.67
PTPN4-208ENST00000460289 CYP11B2P19099 503 aa25.51■■□□□ 1.67
PTPN4-208ENST00000460289 UBE3AQ05086 875 aa25.51■■□□□ 1.67
PTPN4-208ENST00000460289 LRRC55Q6ZSA7 311 aa25.51■■□□□ 1.67
PTPN4-208ENST00000460289 MAEAQ7L5Y9 396 aa25.51■■□□□ 1.67
PTPN4-208ENST00000460289 BRAPQ7Z569 592 aa25.51■■□□□ 1.67
PTPN4-208ENST00000460289 THNSL1Q8IYQ7 743 aa25.51■■□□□ 1.67
PTPN4-208ENST00000460289 COLGALT1Q8NBJ5 622 aa25.51■■□□□ 1.67
PTPN4-208ENST00000460289 HELQQ8TDG4 1101 aa25.51■■□□□ 1.67
PTPN4-208ENST00000460289 PCDHB2Q9Y5E7 798 aa25.51■■□□□ 1.67
PTPN4-208ENST00000460289 CAMK1Q14012 370 aa25.5■■□□□ 1.67
PTPN4-208ENST00000460289 IL17AQ16552 155 aa25.5■■□□□ 1.67
PTPN4-208ENST00000460289 POF1BQ8WVV4 589 aa25.5■■□□□ 1.67
PTPN4-208ENST00000460289 PPP2R3CQ969Q6 453 aa25.5■■□□□ 1.67
PTPN4-208ENST00000460289 INTS4Q96HW7 963 aaKnown RBP25.5■■□□□ 1.67
PTPN4-208ENST00000460289 UBE2ZQ9H832 354 aaPredicted RBP25.5■■□□□ 1.67
PTPN4-208ENST00000460289 DDX19AQ9NUU7 478 aaKnown RBP25.5■■□□□ 1.67
PTPN4-208ENST00000460289 DNM3Q9UQ16 869 aa25.5■■□□□ 1.67
PTPN4-208ENST00000460289 FGF18O76093 207 aa25.49■■□□□ 1.67
PTPN4-208ENST00000460289 MBTD1Q05BQ5 628 aa25.49■■□□□ 1.67
PTPN4-208ENST00000460289 ECM1Q16610 540 aa25.49■■□□□ 1.67
PTPN4-208ENST00000460289 ARL6IP4Q66PJ3 421 aaKnown RBP25.49■■□□□ 1.67
PTPN4-208ENST00000460289 NOTUMQ6P988 496 aa25.49■■□□□ 1.67
PTPN4-208ENST00000460289 GLB1LQ6UWU2 654 aa25.49■■□□□ 1.67
PTPN4-208ENST00000460289 CNNM3Q8NE01 707 aa25.49■■□□□ 1.67
PTPN4-208ENST00000460289 CCDC51Q96ER9 411 aa25.49■■□□□ 1.67
PTPN4-208ENST00000460289 ZNF558Q96NG5 402 aa25.49■■□□□ 1.67
PTPN4-208ENST00000460289 BHMT2Q9H2M3 363 aa25.49■■□□□ 1.67
PTPN4-208ENST00000460289 GPRC5CQ9NQ84 441 aa25.49■■□□□ 1.67
PTPN4-208ENST00000460289 HCSTQ9UBK5 93 aa25.49■■□□□ 1.67
PTPN4-208ENST00000460289 TSPAN1O60635 241 aa25.48■■□□□ 1.67
PTPN4-208ENST00000460289 BMP1P13497 986 aa25.48■■□□□ 1.67
PTPN4-208ENST00000460289 DNAJB1P25685 340 aa25.48■■□□□ 1.67
PTPN4-208ENST00000460289 PPM1AP35813 382 aa25.48■■□□□ 1.67
PTPN4-208ENST00000460289 KCNT2Q6UVM3 1135 aa25.48■■□□□ 1.67
PTPN4-208ENST00000460289 MRPL10Q7Z7H8 261 aaKnown RBP25.48■■□□□ 1.67
PTPN4-208ENST00000460289 LPPQ93052 612 aa25.48■■□□□ 1.67
PTPN4-208ENST00000460289 PUF60Q9UHX1 559 aaKnown RBP25.48■■□□□ 1.67
PTPN4-208ENST00000460289 VPS37CA5D8V6 355 aaPredicted RBP25.47■■□□□ 1.67
PTPN4-208ENST00000460289 CARNS1A5YM72 827 aa25.47■■□□□ 1.67
PTPN4-208ENST00000460289 LRRIQ4A6NIV6 560 aa25.47■■□□□ 1.67
PTPN4-208ENST00000460289 KCNQ1P51787 676 aa25.47■■□□□ 1.67
PTPN4-208ENST00000460289 PLCB3Q01970 1234 aa25.47■■□□□ 1.67
PTPN4-208ENST00000460289 LONRF3Q496Y0 759 aa25.47■■□□□ 1.67
PTPN4-208ENST00000460289 KCTD17Q8N5Z5 321 aa25.47■■□□□ 1.67
PTPN4-208ENST00000460289 PABPC5Q96DU9 382 aaKnown RBP25.47■■□□□ 1.67
PTPN4-208ENST00000460289 C2orf40Q9H1Z8 148 aa25.47■■□□□ 1.67
PTPN4-208ENST00000460289 UBN1Q9NPG3 1134 aa25.47■■□□□ 1.67
PTPN4-208ENST00000460289 LZTS1Q9Y250 596 aa25.47■■□□□ 1.67
PTPN4-208ENST00000460289 CNTNAP2Q9UHC6 1331 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 PP2D1A8MPX8 630 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 K7ELQ4 463 aaPredicted RBP25.46■■□□□ 1.67
PTPN4-208ENST00000460289 OFD1O75665 1012 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 EYA4O95677 639 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 BMP15O95972 392 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 CDC25AP30304 524 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 ALDH7A1P49419 539 aaKnown RBP25.46■■□□□ 1.67
PTPN4-208ENST00000460289 KRT17Q04695 432 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 PPP2R5AQ15172 486 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 NOMO2Q5JPE7 1267 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 UBXN11Q5T124 520 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 PDE12Q6L8Q7 609 aaKnown RBP25.46■■□□□ 1.67
PTPN4-208ENST00000460289 ZBTB8OSQ8IWT0 167 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 MICAL1Q8TDZ2 1067 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 ADAMTS19Q8TE59 1207 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 SPG21Q9NZD8 308 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 KIAA1671Q9BY89 1806 aa25.46■■□□□ 1.67
PTPN4-208ENST00000460289 VWA3AA6NCI4 1184 aa25.45■■□□□ 1.66
PTPN4-208ENST00000460289 CSPG5O95196 566 aa25.45■■□□□ 1.66
PTPN4-208ENST00000460289 NCLP19338 710 aaKnown RBP25.45■■□□□ 1.66
PTPN4-208ENST00000460289 KCNA5P22460 613 aa25.45■■□□□ 1.66
PTPN4-208ENST00000460289 COL19A1Q14993 1142 aa25.45■■□□□ 1.66
PTPN4-208ENST00000460289 AMHR2Q16671 573 aa25.45■■□□□ 1.66
PTPN4-208ENST00000460289 LEXMQ3ZCV2 418 aa25.45■■□□□ 1.66
PTPN4-208ENST00000460289 MRPS27Q92552 414 aaKnown RBP25.45■■□□□ 1.66
PTPN4-208ENST00000460289 KIFAP3Q92845 792 aa25.45■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms