RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 AENQ8WTP8 325 aaKnown RBP12.81□□□□□ -0.36
SYNE2-207ENST00000458046 FAM163AQ96GL9 167 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-207ENST00000458046 POLR3CQ9BUI4 534 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-207ENST00000458046 TLR10Q9BXR5 811 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 DDX4Q9NQI0 724 aaKnown RBP12.81□□□□□ -0.36
SYNE2-207ENST00000458046 TLR2O60603 784 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 NOL4O94818 638 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 PRLRP16471 622 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 TCP1P17987 556 aaKnown RBP12.8□□□□□ -0.36
SYNE2-207ENST00000458046 PPM1FP49593 454 aaPredicted RBP12.8□□□□□ -0.36
SYNE2-207ENST00000458046 DDX60LQ5H9U9 1706 aaKnown RBP12.8□□□□□ -0.36
SYNE2-207ENST00000458046 HABP4Q5JVS0 413 aaKnown RBP12.8□□□□□ -0.36
SYNE2-207ENST00000458046 FAM26FQ5R3K3 315 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 KLHDC7AQ5VTJ3 777 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 TMC7Q7Z402 723 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 MILR1Q7Z6M3 343 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 NAV1Q8NEY1 1877 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 TBC1D16Q8TBP0 767 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 NEK9Q8TD19 979 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 MXD3Q9BW11 206 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 LSM14BQ9BX40 385 aaKnown RBP12.8□□□□□ -0.36
SYNE2-207ENST00000458046 RBM12Q9NTZ6 932 aaKnown RBP12.8□□□□□ -0.36
SYNE2-207ENST00000458046 XPO7Q9UIA9 1087 aaKnown RBP12.8□□□□□ -0.36
SYNE2-207ENST00000458046 TMEM110-MUSTN1A8MSY1 372 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 HSPA8P11142 646 aaKnown RBP12.8□□□□□ -0.36
SYNE2-207ENST00000458046 DNAJB2P25686 324 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 PAFAH1B1P43034 410 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 RNASE9P60153 205 aaKnown RBP12.8□□□□□ -0.36
SYNE2-207ENST00000458046 ZNF543Q08ER8 600 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 HERC4Q5GLZ8 1057 aaPredicted RBP12.8□□□□□ -0.36
SYNE2-207ENST00000458046 USP17L6PQ6QN14 398 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 NOX5Q96PH1 765 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.8□□□□□ -0.36
SYNE2-207ENST00000458046 PSTPIP2Q9H939 334 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 ZNF408Q9H9D4 720 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 BMP2KQ9NSY1 1161 aaPredicted RBP12.8□□□□□ -0.36
SYNE2-207ENST00000458046 MYH1P12882 1939 aa12.8□□□□□ -0.36
SYNE2-207ENST00000458046 SORBS3O60504 671 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 RPS6KA5O75582 802 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 TTLL1O95922 423 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 FTCDO95954 541 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 F2P00734 622 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 HSD17B7P56937 341 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 FOXK1P85037 733 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 SLC9C1Q4G0N8 1177 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 SFMBT2Q5VUG0 894 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 BRSK2Q8IWQ3 736 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 TBC1D5Q92609 795 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 CUL5Q93034 780 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 SPAG5Q96R06 1193 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 TRIM6Q9C030 488 aaPredicted RBP12.79□□□□□ -0.36
SYNE2-207ENST00000458046 RABEP2Q9H5N1 569 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 HOXC10Q9NYD6 342 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 GAKO14976 1311 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 ABCB11O95342 1321 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.79□□□□□ -0.36
SYNE2-207ENST00000458046 POTEB3A0JP26 581 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 POTECB2RU33 542 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 PJA2O43164 708 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 SNHG28P0DPA3 235 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 STAT3P40763 770 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 RBM5P52756 815 aaKnown RBP eCLIP12.79□□□□□ -0.36
SYNE2-207ENST00000458046 MRPL12P52815 198 aaKnown RBP12.79□□□□□ -0.36
SYNE2-207ENST00000458046 GABPAQ06546 454 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 PPP2R5CQ13362 524 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 ZCWPW2Q504Y3 356 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 HAUS3Q68CZ6 603 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 POTEBQ6S5H4 581 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 EFCAB3Q8N7B9 438 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 NLGN2Q8NFZ4 835 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 EPS8L1Q8TE68 723 aa12.79□□□□□ -0.36
SYNE2-207ENST00000458046 PACSIN2Q9UNF0 486 aaPredicted RBP12.79□□□□□ -0.36
SYNE2-207ENST00000458046 PALMO75781 387 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 PLA2G4BP0C869 781 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 VARSP26640 1264 aaKnown RBP12.78□□□□□ -0.36
SYNE2-207ENST00000458046 SCNN1DP51172 638 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 TTC19Q6DKK2 380 aaPredicted RBP12.78□□□□□ -0.36
SYNE2-207ENST00000458046 PNMA8AQ86V59 439 aaPredicted RBP12.78□□□□□ -0.36
SYNE2-207ENST00000458046 TSEN2Q8NCE0 465 aaKnown RBP12.78□□□□□ -0.36
SYNE2-207ENST00000458046 FAM76AQ8TAV0 307 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 RBM17Q96I25 401 aaKnown RBP12.78□□□□□ -0.36
SYNE2-207ENST00000458046 WBP1LQ9NX94 342 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 STIM2Q9P246 746 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 ADAMTS1Q9UHI8 967 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.78□□□□□ -0.36
SYNE2-207ENST00000458046 MYH10P35580 1976 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 SERPINB2P05120 415 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 C8orf74Q6P047 294 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 CCBE1Q6UXH8 406 aaPredicted RBP12.78□□□□□ -0.36
SYNE2-207ENST00000458046 GPBP1Q86WP2 473 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 FAM133AQ8N9E0 248 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 TBC1D22AQ8WUA7 517 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 PACSIN1Q9BY11 444 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 RASSF4Q9H2L5 321 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 POLD4Q9HCU8 107 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 SRA1Q9HD15 236 aaKnown RBP12.78□□□□□ -0.36
SYNE2-207ENST00000458046 CREBZFQ9NS37 354 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 USP40Q9NVE5 1235 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 CEP72Q9P209 647 aa12.78□□□□□ -0.36
SYNE2-207ENST00000458046 SERPINB13Q9UIV8 391 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms