RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 CLDND1Q9NY35 253 aa23.61■■□□□ 1.37
HMGB3-205ENST00000455596 DBR1Q9UK59 544 aaKnown RBP23.61■■□□□ 1.37
HMGB3-205ENST00000455596 USO1O60763 962 aaKnown RBP23.6■■□□□ 1.37
HMGB3-205ENST00000455596 ERLIN2O94905 339 aa23.6■■□□□ 1.37
HMGB3-205ENST00000455596 ARL2P36404 184 aa23.6■■□□□ 1.37
HMGB3-205ENST00000455596 TOB1P50616 345 aaPredicted RBP23.6■■□□□ 1.37
HMGB3-205ENST00000455596 FXR2P51116 673 aaKnown RBP eCLIP23.6■■□□□ 1.37
HMGB3-205ENST00000455596 POU5F1BQ06416 359 aa23.6■■□□□ 1.37
HMGB3-205ENST00000455596 HYAL1Q12794 435 aa23.6■■□□□ 1.37
HMGB3-205ENST00000455596 HAUS3Q68CZ6 603 aa23.6■■□□□ 1.37
HMGB3-205ENST00000455596 MCTP1Q6DN14 999 aa23.6■■□□□ 1.37
HMGB3-205ENST00000455596 KCNT2Q6UVM3 1135 aa23.6■■□□□ 1.37
HMGB3-205ENST00000455596 C4orf32Q8N8J7 132 aa23.6■■□□□ 1.37
HMGB3-205ENST00000455596 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.6■■□□□ 1.37
HMGB3-205ENST00000455596 ZNF558Q96NG5 402 aa23.6■■□□□ 1.37
HMGB3-205ENST00000455596 NECAB3Q96P71 396 aaPredicted RBP23.6■■□□□ 1.37
HMGB3-205ENST00000455596 PCDHB6Q9Y5E3 794 aa23.6■■□□□ 1.37
HMGB3-205ENST00000455596 CUL9Q8IWT3 2517 aa23.6■■□□□ 1.37
HMGB3-205ENST00000455596 TDRD15B5MCY1 1934 aaKnown RBP23.59■■□□□ 1.37
HMGB3-205ENST00000455596 ZNF623O75123 536 aa23.59■■□□□ 1.37
HMGB3-205ENST00000455596 MUTP22033 750 aa23.59■■□□□ 1.37
HMGB3-205ENST00000455596 IRS1P35568 1242 aa23.59■■□□□ 1.37
HMGB3-205ENST00000455596 PTENP60484 403 aa23.59■■□□□ 1.37
HMGB3-205ENST00000455596 PTGDRQ13258 359 aa23.59■■□□□ 1.37
HMGB3-205ENST00000455596 PCBP1Q15365 356 aaKnown RBP eCLIP23.59■■□□□ 1.37
HMGB3-205ENST00000455596 POTEGQ6S5H5 508 aa23.59■■□□□ 1.37
HMGB3-205ENST00000455596 IFNLR1Q8IU57 520 aaPredicted RBP23.59■■□□□ 1.37
HMGB3-205ENST00000455596 ASAP3Q8TDY4 903 aa23.59■■□□□ 1.37
HMGB3-205ENST00000455596 LPPQ93052 612 aa23.59■■□□□ 1.37
HMGB3-205ENST00000455596 PGBD4Q96DM1 585 aa23.59■■□□□ 1.37
HMGB3-205ENST00000455596 TLR9Q9NR96 1032 aa23.59■■□□□ 1.37
HMGB3-205ENST00000455596 H3BQ06 376 aaPredicted RBP23.58■■□□□ 1.37
HMGB3-205ENST00000455596 H3BQV1 296 aa23.58■■□□□ 1.37
HMGB3-205ENST00000455596 PPM1AP35813 382 aa23.58■■□□□ 1.37
HMGB3-205ENST00000455596 PLCB3Q01970 1234 aa23.58■■□□□ 1.37
HMGB3-205ENST00000455596 CAPSQ13938 189 aa23.58■■□□□ 1.37
HMGB3-205ENST00000455596 CTC1Q2NKJ3 1217 aa23.58■■□□□ 1.37
HMGB3-205ENST00000455596 PUS10Q3MIT2 529 aaKnown RBP23.58■■□□□ 1.37
HMGB3-205ENST00000455596 MICAL1Q8TDZ2 1067 aa23.58■■□□□ 1.37
HMGB3-205ENST00000455596 RAB34Q9BZG1 259 aa23.58■■□□□ 1.37
HMGB3-205ENST00000455596 POLR3FQ9H1D9 316 aaPredicted RBP23.58■■□□□ 1.37
HMGB3-205ENST00000455596 IGFLR1Q9H665 355 aa23.58■■□□□ 1.37
HMGB3-205ENST00000455596 LRWD1Q9UFC0 647 aa23.58■■□□□ 1.37
HMGB3-205ENST00000455596 SMC3Q9UQE7 1217 aa23.58■■□□□ 1.37
HMGB3-205ENST00000455596 LZTS1Q9Y250 596 aa23.58■■□□□ 1.37
HMGB3-205ENST00000455596 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.58■■□□□ 1.37
HMGB3-205ENST00000455596 PCDHB2Q9Y5E7 798 aa23.58■■□□□ 1.37
HMGB3-205ENST00000455596 LAD1O00515 517 aa23.57■■□□□ 1.36
HMGB3-205ENST00000455596 GLRA2P23416 452 aa23.57■■□□□ 1.36
HMGB3-205ENST00000455596 AXLP30530 894 aa23.57■■□□□ 1.36
HMGB3-205ENST00000455596 HOXA11P31270 313 aaPredicted RBP23.57■■□□□ 1.36
HMGB3-205ENST00000455596 GTF2F1P35269 517 aaKnown RBP eCLIP23.57■■□□□ 1.36
HMGB3-205ENST00000455596 NCBP1Q09161 790 aaKnown RBP23.57■■□□□ 1.36
HMGB3-205ENST00000455596 PDIA5Q14554 519 aa23.57■■□□□ 1.36
HMGB3-205ENST00000455596 LONRF3Q496Y0 759 aa23.57■■□□□ 1.36
HMGB3-205ENST00000455596 PTCRAQ6ISU1 281 aaPredicted RBP23.57■■□□□ 1.36
HMGB3-205ENST00000455596 PDE12Q6L8Q7 609 aaKnown RBP23.57■■□□□ 1.36
HMGB3-205ENST00000455596 GLB1LQ6UWU2 654 aa23.57■■□□□ 1.36
HMGB3-205ENST00000455596 ADGRD2Q7Z7M1 963 aa23.57■■□□□ 1.36
HMGB3-205ENST00000455596 MCPH1Q8NEM0 835 aa23.57■■□□□ 1.36
HMGB3-205ENST00000455596 MRPS27Q92552 414 aaKnown RBP23.57■■□□□ 1.36
HMGB3-205ENST00000455596 PUF60Q9UHX1 559 aaKnown RBP23.57■■□□□ 1.36
HMGB3-205ENST00000455596 STK24Q9Y6E0 443 aa23.57■■□□□ 1.36
HMGB3-205ENST00000455596 VCANP13611 3396 aa23.57■■□□□ 1.36
HMGB3-205ENST00000455596 INO80B-WBP1J3KQ70 363 aa23.56■■□□□ 1.36
HMGB3-205ENST00000455596 CCT6AP40227 531 aaKnown RBP23.56■■□□□ 1.36
HMGB3-205ENST00000455596 KRT17Q04695 432 aa23.56■■□□□ 1.36
HMGB3-205ENST00000455596 RILPL1Q5EBL4 403 aa23.56■■□□□ 1.36
HMGB3-205ENST00000455596 MAEAQ7L5Y9 396 aa23.56■■□□□ 1.36
HMGB3-205ENST00000455596 NFKBIZQ9BYH8 718 aa23.56■■□□□ 1.36
HMGB3-205ENST00000455596 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.56■■□□□ 1.36
HMGB3-205ENST00000455596 SPG21Q9NZD8 308 aa23.56■■□□□ 1.36
HMGB3-205ENST00000455596 ARHGEF35A5YM69 484 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 MEIS3P2A8K0S8 358 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 TSPAN1O60635 241 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 LTBRP36941 435 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 PBX3P40426 434 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 PRPHP41219 470 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 MBTD1Q05BQ5 628 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 NOMO2Q5JPE7 1267 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 UBXN11Q5T124 520 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 NOTUMQ6P988 496 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 MRPL10Q7Z7H8 261 aaKnown RBP23.55■■□□□ 1.36
HMGB3-205ENST00000455596 IGSF22Q8N9C0 903 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 CNNM3Q8NE01 707 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 GPRC5CQ9NQ84 441 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 INPP5FQ9Y2H2 1132 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 PCDHGC5Q9Y5F6 944 aa23.55■■□□□ 1.36
HMGB3-205ENST00000455596 XIRP2A4UGR9 3374 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 GRXCR2A6NFK2 248 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 OFD1O75665 1012 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 IL9P15248 144 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 NRIP1P48552 1158 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 ALDH7A1P49419 539 aaKnown RBP23.54■■□□□ 1.36
HMGB3-205ENST00000455596 BCAR1P56945 870 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 ERVFC1P60507 584 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 ADAM15Q13444 863 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 PADI6Q6TGC4 694 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 AGMOQ6ZNB7 445 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 RBM23Q86U06 439 aaKnown RBP23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms