RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 PCSK9Q8NBP7 692 aaKnown RBP12.11□□□□□ -0.47
SCN9A-205ENST00000454569 CCDC47Q96A33 483 aaKnown RBP12.11□□□□□ -0.47
SCN9A-205ENST00000454569 NTPCRQ9BSD7 190 aaKnown RBP12.11□□□□□ -0.47
SCN9A-205ENST00000454569 TIPINQ9BVW5 301 aa12.11□□□□□ -0.47
SCN9A-205ENST00000454569 KCTD10Q9H3F6 313 aa12.11□□□□□ -0.47
SCN9A-205ENST00000454569 MINDY3Q9H8M7 445 aa12.11□□□□□ -0.47
SCN9A-205ENST00000454569 GTF2IRD1Q9UHL9 959 aa12.11□□□□□ -0.47
SCN9A-205ENST00000454569 C17orf102A2RUQ5 167 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 RRN3P2A6NIE6 340 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 TGFB1I1O43294 461 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 IQCF3P0C7M6 154 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 CYP2C9P11712 490 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 ITGA7Q13683 1181 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 FAM47CQ5HY64 1035 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 L1TD1Q5T7N2 865 aaKnown RBP12.1□□□□□ -0.47
SCN9A-205ENST00000454569 CENPPQ6IPU0 288 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 TTI2Q6NXR4 508 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 MYOCDQ8IZQ8 938 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 GUF1Q8N442 669 aaKnown RBP12.1□□□□□ -0.47
SCN9A-205ENST00000454569 FAM200AQ8TCP9 573 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 DIS3LQ8TF46 1054 aaKnown RBP12.1□□□□□ -0.47
SCN9A-205ENST00000454569 U2AF1L4Q8WU68 220 aaKnown RBP12.1□□□□□ -0.47
SCN9A-205ENST00000454569 DNAJB3Q8WWF6 145 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 VTI1AQ96AJ9 217 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 TSEN34Q9BSV6 310 aaKnown RBP12.1□□□□□ -0.47
SCN9A-205ENST00000454569 KATNAL1Q9BW62 490 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 OSBPL7Q9BZF2 842 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 FAM49AQ9H0Q0 323 aaPredicted RBP12.1□□□□□ -0.47
SCN9A-205ENST00000454569 KMT5AQ9NQR1 393 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 LARSQ9P2J5 1176 aaKnown RBP12.1□□□□□ -0.47
SCN9A-205ENST00000454569 SEL1LQ9UBV2 794 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 PHF24Q9UPV7 400 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 PPME1Q9Y570 386 aa12.1□□□□□ -0.47
SCN9A-205ENST00000454569 A0A087WZ62 844 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 LRRIQ4A6NIV6 560 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 ANKRD63C9JTQ0 380 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 MAGEB2O15479 319 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 SGPL1O95470 568 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 MAPTP10636 758 aaKnown RBP12.09□□□□□ -0.47
SCN9A-205ENST00000454569 RTP1P59025 263 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 GTF2BQ00403 316 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 PKN2Q16513 984 aaKnown RBP12.09□□□□□ -0.47
SCN9A-205ENST00000454569 ZCWPW2Q504Y3 356 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 ARRDC4Q8NCT1 418 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 ZSWIM2Q8NEG5 633 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 SPIRE2Q8WWL2 714 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 PSPC1Q8WXF1 523 aaKnown RBP12.09□□□□□ -0.47
SCN9A-205ENST00000454569 P2RX5Q93086 422 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 BPIFA3Q9BQP9 254 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 FDXACB1Q9BRP7 624 aaPredicted RBP12.09□□□□□ -0.47
SCN9A-205ENST00000454569 MCOLN1Q9GZU1 580 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 IFT122Q9HBG6 1241 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 SAMSN1Q9NSI8 373 aaKnown RBP12.09□□□□□ -0.47
SCN9A-205ENST00000454569 TRMT13Q9NUP7 481 aaKnown RBP12.09□□□□□ -0.47
SCN9A-205ENST00000454569 FANCLQ9NW38 375 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 ARHGAP28Q9P2N2 729 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 SCN5AQ14524 2016 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 DENND3A2RUS2 1198 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 MOXD2PA6NHM9 499 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 CLIC2O15247 247 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 CCNE1P24864 410 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 ERCC5P28715 1186 aaPredicted RBP12.09□□□□□ -0.47
SCN9A-205ENST00000454569 NAMPTP43490 491 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 PAK1Q13153 545 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 DMP1Q13316 513 aaPredicted RBP12.09□□□□□ -0.47
SCN9A-205ENST00000454569 BMT2Q1RMZ1 405 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 SLC39A4Q6P5W5 647 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 IRF2BP1Q8IU81 584 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 SLC43A3Q8NBI5 491 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 RNF149Q8NC42 400 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 TCP11Q8WWU5 503 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 DHX38Q92620 1227 aaKnown RBP12.09□□□□□ -0.47
SCN9A-205ENST00000454569 DHTKD1Q96HY7 919 aaPredicted RBP12.09□□□□□ -0.47
SCN9A-205ENST00000454569 IFT74Q96LB3 600 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 NLRP4Q96MN2 994 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 ADAMTS10Q9H324 1103 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 ST6GALNAC4Q9H4F1 302 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 C17orf75Q9HAS0 396 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 RWDD2AQ9UIY3 292 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 AKT3Q9Y243 479 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 ALPK3Q96L96 1907 aa12.09□□□□□ -0.47
SCN9A-205ENST00000454569 TET1Q8NFU7 2136 aa12.08□□□□□ -0.47
SCN9A-205ENST00000454569 ANK1P16157 1881 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 SMIM35A0A1B0GVV1 85 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 DNM1LO00429 736 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 GPR32O75388 356 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 TFRCP02786 760 aaKnown RBP12.08□□□□□ -0.48
SCN9A-205ENST00000454569 ATP1A3P13637 1013 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 FGFR4P22455 802 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 MRE11P49959 708 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 GPC3P51654 580 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 NLRP11P59045 1033 aaKnown RBP12.08□□□□□ -0.48
SCN9A-205ENST00000454569 KNOP1Q1ED39 458 aaKnown RBP12.08□□□□□ -0.48
SCN9A-205ENST00000454569 KIZQ2M2Z5 673 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 SESTD1Q86VW0 696 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 RETREG2Q8NC44 543 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 ENOX1Q8TC92 643 aaKnown RBP12.08□□□□□ -0.48
SCN9A-205ENST00000454569 TMEM40Q8WWA1 233 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 GLT1D1Q96MS3 346 aa12.08□□□□□ -0.48
SCN9A-205ENST00000454569 HAPLN2Q9GZV7 340 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms