RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 FSCN2O14926 492 aa13.41□□□□□ -0.26
USP40-210ENST00000454354 SRGAP2CP0DJJ0 459 aa13.41□□□□□ -0.26
USP40-210ENST00000454354 PPM1AP35813 382 aa13.41□□□□□ -0.26
USP40-210ENST00000454354 PTENP60484 403 aa13.41□□□□□ -0.26
USP40-210ENST00000454354 GNL2Q13823 731 aaKnown RBP13.41□□□□□ -0.26
USP40-210ENST00000454354 ZNF174Q15697 407 aa13.41□□□□□ -0.26
USP40-210ENST00000454354 PTCRAQ6ISU1 281 aaPredicted RBP13.41□□□□□ -0.26
USP40-210ENST00000454354 KCNT2Q6UVM3 1135 aa13.41□□□□□ -0.26
USP40-210ENST00000454354 ADGRD2Q7Z7M1 963 aa13.41□□□□□ -0.26
USP40-210ENST00000454354 THNSL1Q8IYQ7 743 aa13.41□□□□□ -0.26
USP40-210ENST00000454354 C4orf32Q8N8J7 132 aa13.41□□□□□ -0.26
USP40-210ENST00000454354 RNF149Q8NC42 400 aa13.41□□□□□ -0.26
USP40-210ENST00000454354 RNF169Q8NCN4 708 aa13.41□□□□□ -0.26
USP40-210ENST00000454354 TBC1D32Q96NH3 1257 aa13.41□□□□□ -0.26
USP40-210ENST00000454354 TLR9Q9NR96 1032 aa13.41□□□□□ -0.26
USP40-210ENST00000454354 DBR1Q9UK59 544 aaKnown RBP13.41□□□□□ -0.26
USP40-210ENST00000454354 NOL7Q9UMY1 257 aaKnown RBP13.41□□□□□ -0.26
USP40-210ENST00000454354 KIF3AQ9Y496 699 aa13.41□□□□□ -0.26
USP40-210ENST00000454354 H3BQ06 376 aaPredicted RBP13.4□□□□□ -0.26
USP40-210ENST00000454354 MED24O75448 989 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 CD2BP2O95400 341 aaKnown RBP13.4□□□□□ -0.26
USP40-210ENST00000454354 MUTP22033 750 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 RPA1P27694 616 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 HOXA11P31270 313 aaPredicted RBP13.4□□□□□ -0.26
USP40-210ENST00000454354 GTF2F1P35269 517 aaKnown RBP eCLIP13.4□□□□□ -0.26
USP40-210ENST00000454354 ARL2P36404 184 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 TECP42680 631 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 FXR2P51116 673 aaKnown RBP eCLIP13.4□□□□□ -0.26
USP40-210ENST00000454354 ADAM15Q13444 863 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 CAPSQ13938 189 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 TFDP1Q14186 410 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 PDE12Q6L8Q7 609 aaKnown RBP13.4□□□□□ -0.26
USP40-210ENST00000454354 CATSPER3Q86XQ3 398 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 EFHBQ8N7U6 833 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 ERMNQ8TAM6 284 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 ASAP3Q8TDY4 903 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 PIGOQ8TEQ8 1089 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 MRPS27Q92552 414 aaKnown RBP13.4□□□□□ -0.26
USP40-210ENST00000454354 TMX3Q96JJ7 454 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 CCDC43Q96MW1 224 aaKnown RBP13.4□□□□□ -0.26
USP40-210ENST00000454354 ZNF558Q96NG5 402 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 NFKBIZQ9BYH8 718 aa13.4□□□□□ -0.26
USP40-210ENST00000454354 FSD2A1L4K1 749 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 CARNS1A5YM72 827 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 MEIS3P2A8K0S8 358 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 TBX10O75333 385 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 CSPG5O95196 566 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 IL9P15248 144 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 AXLP30530 894 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 MCM2P49736 904 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 TOB1P50616 345 aaPredicted RBP13.39□□□□□ -0.27
USP40-210ENST00000454354 ERVFC1P60507 584 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 DLX2Q07687 328 aaPredicted RBP13.39□□□□□ -0.27
USP40-210ENST00000454354 UBXN11Q5T124 520 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 HAUS3Q68CZ6 603 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 MRPL10Q7Z7H8 261 aaKnown RBP13.39□□□□□ -0.27
USP40-210ENST00000454354 FAM178BQ8IXR5 827 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 SLC39A11Q8N1S5 342 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 LPPQ93052 612 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 CCDC51Q96ER9 411 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 NACC1Q96RE7 527 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 PCDHB2Q9Y5E7 798 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 PCDHGC5Q9Y5F6 944 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 TRIP11Q15643 1979 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 TRIOO75962 3097 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 CNTNAP2Q9UHC6 1331 aa13.39□□□□□ -0.27
USP40-210ENST00000454354 LINC01565O15544 149 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 TSPAN1O60635 241 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 USO1O60763 962 aaKnown RBP13.38□□□□□ -0.27
USP40-210ENST00000454354 ERLIN2O94905 339 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 GLRA2P23416 452 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 PBX3P40426 434 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 NRIP1P48552 1158 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 MBTD1Q05BQ5 628 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 NBR1Q14596 966 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 AMHR2Q16671 573 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 POTEGQ6S5H5 508 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 GLB1LQ6UWU2 654 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 AGMOQ6ZNB7 445 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 IGSF22Q8N9C0 903 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 MCPH1Q8NEM0 835 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 PGBD4Q96DM1 585 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 MSLNLQ96KJ4 702 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 CDCA3Q99618 268 aaPredicted RBP13.38□□□□□ -0.27
USP40-210ENST00000454354 POLR3FQ9H1D9 316 aaPredicted RBP13.38□□□□□ -0.27
USP40-210ENST00000454354 IGFLR1Q9H665 355 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 TBC1D13Q9NVG8 400 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 SPG21Q9NZD8 308 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 FAM50BQ9Y247 325 aa13.38□□□□□ -0.27
USP40-210ENST00000454354 A0A087WWV3 80 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 LAD1O00515 517 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 OFD1O75665 1012 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 GLP2RO95838 553 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 NCLP19338 710 aaKnown RBP13.37□□□□□ -0.27
USP40-210ENST00000454354 GJB2P29033 226 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 PRPHP41219 470 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 BCAR1P56945 870 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 PTGDRQ13258 359 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 SMAD4Q13485 552 aaKnown RBP13.37□□□□□ -0.27
USP40-210ENST00000454354 PDIA5Q14554 519 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms