RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, human

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF4-208	ENST00000452047	MEIS3P2	A8K0S8	358 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	MBTPS2	O43462	519 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	SRGAP2C	P0DJJ0	459 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	HOXA11	P31270	313 aa	Predicted RBP	13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	PPM1A	P35813	382 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	NRIP1	P48552	1158 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	RARRES1	P49788	294 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	RAB27A	P51159	221 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	ZP2	Q05996	745 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	SMAD2	Q15796	467 aa	Known RBP	13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	CLUL1	Q15846	466 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	GJD3	Q8N144	294 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	RNF149	Q8NC42	400 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	RSPH1	Q8WYR4	309 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	MRPS27	Q92552	414 aa	Known RBP	13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	LPP	Q93052	612 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	MRPL9	Q9BYD2	267 aa	Known RBP	13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	EPHX3	Q9H6B9	360 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	CLEC1B	Q9P126	229 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	FAM50B	Q9Y247	325 aa		13.91	□□□□□ -0.18
CPSF4-208	ENST00000452047	ASAP2	O43150	1006 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	DGAT1	O75907	488 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	EYA4	O95677	639 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	SPATA31C1	P0DKV0	1188 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	SKI	P12755	728 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	ATP2B1	P20020	1258 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	NDUFV1	P49821	464 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	ORC2	Q13416	577 aa	Predicted RBP	13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	SMAD4	Q13485	552 aa	Known RBP	13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	MXD4	Q14582	209 aa	Predicted RBP	13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	PDE12	Q6L8Q7	609 aa	Known RBP	13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	RBM23	Q86U06	439 aa	Known RBP	13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	NOSTRIN	Q8IVI9	506 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	SLC39A11	Q8N1S5	342 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	VN1R2	Q8NFZ6	395 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	PIGO	Q8TEQ8	1089 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	TLE6	Q9H808	572 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	SPG21	Q9NZD8	308 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	PRKAG3	Q9UGI9	489 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	CD207	Q9UJ71	328 aa		13.9	□□□□□ -0.18
CPSF4-208	ENST00000452047	C19orf67	A6NJJ6	358 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	PER2	O15055	1255 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	MED24	O75448	989 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	ARL2	P36404	184 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	BCAR1	P56945	870 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	PTEN	P60484	403 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	RBM10	P98175	930 aa	Known RBP	13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	POU5F1B	Q06416	359 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	COASY	Q13057	564 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	CAPS	Q13938	189 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	KCNC3	Q14003	757 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	DUSP6	Q16828	381 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	LONRF3	Q496Y0	759 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	UBXN11	Q5T124	520 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	PLPP4	Q5VZY2	271 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	GLB1L	Q6UWU2	654 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	AGMO	Q6ZNB7	445 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	MRPL10	Q7Z7H8	261 aa	Known RBP	13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	CATSPER3	Q86XQ3	398 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	ADHFE1	Q8IWW8	467 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	SMRP1	Q8NCR6	262 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	ASAP3	Q8TDY4	903 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	MICAL1	Q8TDZ2	1067 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	CDCA3	Q99618	268 aa	Predicted RBP	13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	TCF25	Q9BQ70	676 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	C1QTNF1	Q9BXJ1	281 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	TUFT1	Q9NNX1	390 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	TBC1D13	Q9NVG8	400 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	PUF60	Q9UHX1	559 aa	Known RBP	13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	BARX2	Q9UMQ3	279 aa	Predicted RBP	13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047	PCDHB2	Q9Y5E7	798 aa		13.89	□□□□□ -0.19
CPSF4-208	ENST00000452047		A0A087WWV3	80 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	FSD2	A1L4K1	749 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	HIDE1	A8MVS5	230 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	PI4K2B	G5E9Z4	385 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	B4GALT3	O60512	393 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	TSPAN1	O60635	241 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	OFD1	O75665	1012 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	OR52Z1	P0C646	297 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	XRCC6	P12956	609 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	GLRA2	P23416	452 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	U2AF2	P26368	475 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	TRAPPC10	P48553	1259 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	KRT17	Q04695	432 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	MBTD1	Q05BQ5	628 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	RABEP1	Q15276	862 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	PCBP1	Q15365	356 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	ZNF174	Q15697	407 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	NOMO2	Q5JPE7	1267 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	TTC38	Q5R3I4	469 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	TMEM173	Q86WV6	379 aa	Predicted RBP	13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	FAM184A	Q8NB25	1140 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	POLR3C	Q9BUI4	534 aa	Predicted RBP	13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	NFKBIZ	Q9BYH8	718 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	NGRN	Q9NPE2	291 aa	Known RBP	13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	C11orf16	Q9NQ32	467 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	ENTPD7	Q9NQZ7	604 aa		13.88	□□□□□ -0.19
CPSF4-208	ENST00000452047	NT5C1B-RDH14	C9J2C7	533 aa		13.87	□□□□□ -0.19
CPSF4-208	ENST00000452047	USO1	O60763	962 aa	Known RBP	13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms