RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 SPDYE4A6NLX3 237 aa14.9□□□□□ -0.02
HMGB3-204ENST00000448905 CDKL5O76039 1030 aa14.9□□□□□ -0.02
HMGB3-204ENST00000448905 QARSP47897 775 aaKnown RBP14.9□□□□□ -0.02
HMGB3-204ENST00000448905 OTUD6AQ7L8S5 288 aa14.9□□□□□ -0.02
HMGB3-204ENST00000448905 CABP7Q86V35 215 aa14.9□□□□□ -0.02
HMGB3-204ENST00000448905 PRSS33Q8NF86 280 aa14.9□□□□□ -0.02
HMGB3-204ENST00000448905 GJA10Q969M2 543 aa14.9□□□□□ -0.02
HMGB3-204ENST00000448905 NLRP4Q96MN2 994 aa14.9□□□□□ -0.02
HMGB3-204ENST00000448905 FAM193BQ96PV7 902 aaPredicted RBP14.9□□□□□ -0.02
HMGB3-204ENST00000448905 EMILIN2Q9BXX0 1053 aa14.9□□□□□ -0.02
HMGB3-204ENST00000448905 FAM105AQ9NUU6 356 aa14.9□□□□□ -0.02
HMGB3-204ENST00000448905 DBR1Q9UK59 544 aaKnown RBP14.9□□□□□ -0.02
HMGB3-204ENST00000448905 CCDC194A0A1B0GVG4 234 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 ASAP2O43150 1006 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 EDIL3O43854 480 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 TDP2O95551 362 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 GALTP07902 379 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 CTSAP10619 480 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 SP100P23497 879 aaPredicted RBP14.89□□□□□ -0.03
HMGB3-204ENST00000448905 DRP2Q13474 957 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 LETM2Q2VYF4 491 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 DAGLBQ8NCG7 672 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 ATOH1Q92858 354 aaPredicted RBP14.89□□□□□ -0.03
HMGB3-204ENST00000448905 ACSF2Q96CM8 615 aaPredicted RBP14.89□□□□□ -0.03
HMGB3-204ENST00000448905 IGSF21Q96ID5 467 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 CEP170P1Q96L14 293 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 UBN1Q9NPG3 1134 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 CYP26B1Q9NR63 512 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 USTQ9Y2C2 406 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 INPP5FQ9Y2H2 1132 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 PLXNA4Q9HCM2 1894 aa14.89□□□□□ -0.03
HMGB3-204ENST00000448905 ST18O60284 1047 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 OFD1O75665 1012 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 STBD1O95210 358 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 BAG4O95429 457 aaKnown RBP14.88□□□□□ -0.03
HMGB3-204ENST00000448905 P4HBP07237 508 aaKnown RBP14.88□□□□□ -0.03
HMGB3-204ENST00000448905 SRGAP2CP0DJJ0 459 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 GCFC2P16383 781 aaKnown RBP14.88□□□□□ -0.03
HMGB3-204ENST00000448905 KLRC2P26717 231 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 RFC5P40937 340 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 LONRF3Q496Y0 759 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 RARS2Q5T160 578 aaKnown RBP14.88□□□□□ -0.03
HMGB3-204ENST00000448905 ELMSAN1Q6PJG2 1045 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 B3GNT9Q6UX72 402 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 ANO5Q75V66 913 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 SRGAP1Q7Z6B7 1085 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 ZDHHC14Q8IZN3 488 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 TDRD5Q8NAT2 981 aaKnown RBP14.88□□□□□ -0.03
HMGB3-204ENST00000448905 CNNM3Q8NE01 707 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 ETNPPLQ8TBG4 499 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 TCP11Q8WWU5 503 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 PRPF31Q8WWY3 499 aaKnown RBP14.88□□□□□ -0.03
HMGB3-204ENST00000448905 PSPC1Q8WXF1 523 aaKnown RBP14.88□□□□□ -0.03
HMGB3-204ENST00000448905 LPPQ93052 612 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 MBOAT7Q96N66 472 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 SH2D3AQ9BRG2 576 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 TM6SF1Q9BZW5 370 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 GBP3Q9H0R5 595 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 POMKQ9H5K3 350 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 NRDE2Q9H7Z3 1164 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 TBC1D13Q9NVG8 400 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 DPP7Q9UHL4 492 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 SSX2IPQ9Y2D8 614 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 FAN1Q9Y2M0 1017 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 PCDHB2Q9Y5E7 798 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 COL4A3BPQ9Y5P4 624 aa14.88□□□□□ -0.03
HMGB3-204ENST00000448905 GAS2O43903 313 aaKnown RBP14.87□□□□□ -0.03
HMGB3-204ENST00000448905 NR1I2O75469 434 aa14.87□□□□□ -0.03
HMGB3-204ENST00000448905 STK3Q13188 491 aa14.87□□□□□ -0.03
HMGB3-204ENST00000448905 PPP2R5CQ13362 524 aa14.87□□□□□ -0.03
HMGB3-204ENST00000448905 TOB2Q14106 344 aaPredicted RBP14.87□□□□□ -0.03
HMGB3-204ENST00000448905 INF2Q27J81 1249 aa14.87□□□□□ -0.03
HMGB3-204ENST00000448905 PPP4R3AQ6IN85 833 aa14.87□□□□□ -0.03
HMGB3-204ENST00000448905 KSR1Q8IVT5 923 aa14.87□□□□□ -0.03
HMGB3-204ENST00000448905 CEP89Q96ST8 783 aa14.87□□□□□ -0.03
HMGB3-204ENST00000448905 ZBP1Q9H171 429 aa14.87□□□□□ -0.03
HMGB3-204ENST00000448905 MFSD1Q9H3U5 465 aa14.87□□□□□ -0.03
HMGB3-204ENST00000448905 MRPL17Q9NRX2 175 aaKnown RBP14.87□□□□□ -0.03
HMGB3-204ENST00000448905 PDRG1Q9NUG6 133 aa14.87□□□□□ -0.03
HMGB3-204ENST00000448905 LIMD1Q9UGP4 676 aa14.87□□□□□ -0.03
HMGB3-204ENST00000448905 CNTNAP2Q9UHC6 1331 aa14.87□□□□□ -0.03
HMGB3-204ENST00000448905 TECTAO75443 2155 aa14.87□□□□□ -0.03
HMGB3-204ENST00000448905 TMEM150BA6NC51 233 aa14.86□□□□□ -0.03
HMGB3-204ENST00000448905 C2CD4DB7Z1M9 353 aa14.86□□□□□ -0.03
HMGB3-204ENST00000448905 M0R2N6 131 aa14.86□□□□□ -0.03
HMGB3-204ENST00000448905 TBX3O15119 743 aa14.86□□□□□ -0.03
HMGB3-204ENST00000448905 CCNT1O60563 726 aaKnown RBP14.86□□□□□ -0.03
HMGB3-204ENST00000448905 TCF15Q12870 199 aa14.86□□□□□ -0.03
HMGB3-204ENST00000448905 PCBP1Q15365 356 aaKnown RBP eCLIP14.86□□□□□ -0.03
HMGB3-204ENST00000448905 EPHA7Q15375 998 aa14.86□□□□□ -0.03
HMGB3-204ENST00000448905 KIAA1841Q6NSI8 718 aa14.86□□□□□ -0.03
HMGB3-204ENST00000448905 OTOP3Q7RTS5 596 aa14.86□□□□□ -0.03
HMGB3-204ENST00000448905 MRPL10Q7Z7H8 261 aaKnown RBP14.86□□□□□ -0.03
HMGB3-204ENST00000448905 NEK8Q86SG6 692 aa14.86□□□□□ -0.03
HMGB3-204ENST00000448905 C12orf76Q8N812 135 aaPredicted RBP14.86□□□□□ -0.03
HMGB3-204ENST00000448905 SLC22A17Q8WUG5 538 aa14.86□□□□□ -0.03
HMGB3-204ENST00000448905 AUTS2Q8WXX7 1259 aa14.86□□□□□ -0.03
HMGB3-204ENST00000448905 TMEM175Q9BSA9 504 aa14.86□□□□□ -0.03
HMGB3-204ENST00000448905 IFT122Q9HBG6 1241 aa14.86□□□□□ -0.03
HMGB3-204ENST00000448905 AGPAT5Q9NUQ2 364 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms