RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 SAMM50Q9Y512 469 aa16.25■□□□□ 0.19
HMGN1-208ENST00000443046 DOCK8Q8NF50 2099 aa16.25■□□□□ 0.19
HMGN1-208ENST00000443046 EPG5Q9HCE0 2579 aa16.25■□□□□ 0.19
HMGN1-208ENST00000443046 NARSO43776 548 aaKnown RBP16.24■□□□□ 0.19
HMGN1-208ENST00000443046 STBD1O95210 358 aa16.24■□□□□ 0.19
HMGN1-208ENST00000443046 PAPLNO95428 1278 aa16.24■□□□□ 0.19
HMGN1-208ENST00000443046 CNPP09543 421 aaKnown RBP16.24■□□□□ 0.19
HMGN1-208ENST00000443046 SKIP12755 728 aa16.24■□□□□ 0.19
HMGN1-208ENST00000443046 RCAN1P53805 252 aa16.24■□□□□ 0.19
HMGN1-208ENST00000443046 TBC1D8BQ0IIM8 1120 aa16.24■□□□□ 0.19
HMGN1-208ENST00000443046 GLB1LQ6UWU2 654 aa16.24■□□□□ 0.19
HMGN1-208ENST00000443046 ZNF280BQ86YH2 543 aa16.24■□□□□ 0.19
HMGN1-208ENST00000443046 RMDN1Q96DB5 314 aa16.24■□□□□ 0.19
HMGN1-208ENST00000443046 ESYT1Q9BSJ8 1104 aa16.24■□□□□ 0.19
HMGN1-208ENST00000443046 FAM105AQ9NUU6 356 aa16.24■□□□□ 0.19
HMGN1-208ENST00000443046 A0A087WZ62 844 aa16.23■□□□□ 0.19
HMGN1-208ENST00000443046 KRBA1A5PL33 1030 aa16.23■□□□□ 0.19
HMGN1-208ENST00000443046 MSH4O15457 936 aa16.23■□□□□ 0.19
HMGN1-208ENST00000443046 LMNAP02545 664 aaKnown RBP16.23■□□□□ 0.19
HMGN1-208ENST00000443046 DHX32Q7L7V1 743 aaKnown RBP16.23■□□□□ 0.19
HMGN1-208ENST00000443046 REXO1Q8N1G1 1221 aaKnown RBP16.23■□□□□ 0.19
HMGN1-208ENST00000443046 SCLT1Q96NL6 688 aa16.23■□□□□ 0.19
HMGN1-208ENST00000443046 RIT2Q99578 217 aa16.23■□□□□ 0.19
HMGN1-208ENST00000443046 FDXACB1Q9BRP7 624 aaPredicted RBP16.23■□□□□ 0.19
HMGN1-208ENST00000443046 EMILIN2Q9BXX0 1053 aa16.23■□□□□ 0.19
HMGN1-208ENST00000443046 EPS15L1Q9UBC2 864 aa16.23■□□□□ 0.19
HMGN1-208ENST00000443046 TCEAL9Q9UHQ7 104 aa16.23■□□□□ 0.19
HMGN1-208ENST00000443046 FBXL21Q9UKT6 434 aa16.23■□□□□ 0.19
HMGN1-208ENST00000443046 KMT2BQ9UMN6 2715 aaPredicted RBP16.23■□□□□ 0.19
HMGN1-208ENST00000443046 GOLGA8AA7E2F4 631 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 GOLGA8BA8MQT2 603 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 EFEMP2O95967 443 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 SFPQP23246 707 aaKnown RBP eCLIP16.22■□□□□ 0.19
HMGN1-208ENST00000443046 KLRC2P26717 231 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 SFNP31947 248 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 RAB27AP51159 221 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 TSGA10IPQ3SY00 556 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 LONRF3Q496Y0 759 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 TWF2Q6IBS0 349 aaKnown RBP16.22■□□□□ 0.19
HMGN1-208ENST00000443046 CYP26C1Q6V0L0 522 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 ZNF410Q86VK4 478 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 SLC5A5Q92911 643 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 TCEANC2Q96MN5 208 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 C6orf50Q9HD87 102 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 WDR6Q9NNW5 1121 aaKnown RBP16.22■□□□□ 0.19
HMGN1-208ENST00000443046 DLGAP2Q9P1A6 1054 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 CACNA1IQ9P0X4 2223 aa16.22■□□□□ 0.19
HMGN1-208ENST00000443046 CACNA1BQ00975 2339 aa16.21■□□□□ 0.19
HMGN1-208ENST00000443046 MED19A0JLT2 244 aaPredicted RBP16.21■□□□□ 0.19
HMGN1-208ENST00000443046 DDHD2O94830 711 aa16.21■□□□□ 0.19
HMGN1-208ENST00000443046 ADD1P35611 737 aaKnown RBP16.21■□□□□ 0.19
HMGN1-208ENST00000443046 AFF1P51825 1210 aaKnown RBP16.21■□□□□ 0.19
HMGN1-208ENST00000443046 JAK3P52333 1124 aa16.21■□□□□ 0.19
HMGN1-208ENST00000443046 RNASELQ05823 741 aaKnown RBP16.21■□□□□ 0.19
HMGN1-208ENST00000443046 B3GNT9Q6UX72 402 aa16.21■□□□□ 0.19
HMGN1-208ENST00000443046 AGMOQ6ZNB7 445 aa16.21■□□□□ 0.19
HMGN1-208ENST00000443046 MRPL10Q7Z7H8 261 aaKnown RBP16.21■□□□□ 0.19
HMGN1-208ENST00000443046 SLC44A3Q8N4M1 653 aa16.21■□□□□ 0.19
HMGN1-208ENST00000443046 RSAD2Q8WXG1 361 aa16.21■□□□□ 0.19
HMGN1-208ENST00000443046 TMEM175Q9BSA9 504 aa16.21■□□□□ 0.19
HMGN1-208ENST00000443046 INO80BQ9C086 356 aaPredicted RBP16.21■□□□□ 0.19
HMGN1-208ENST00000443046 UNC45AQ9H3U1 944 aa16.21■□□□□ 0.19
HMGN1-208ENST00000443046 PIN4Q9Y237 131 aaKnown RBP16.21■□□□□ 0.19
HMGN1-208ENST00000443046 INPP5FQ9Y2H2 1132 aa16.21■□□□□ 0.19
HMGN1-208ENST00000443046 GPR179Q6PRD1 2367 aa16.21■□□□□ 0.19
HMGN1-208ENST00000443046 MTCL1Q9Y4B5 1905 aaKnown RBP16.2■□□□□ 0.18
HMGN1-208ENST00000443046 KLF18A0A0U1RQI7 1052 aa16.2■□□□□ 0.18
HMGN1-208ENST00000443046 MAFO75444 373 aaPredicted RBP16.2■□□□□ 0.18
HMGN1-208ENST00000443046 CFHP08603 1231 aa16.2■□□□□ 0.18
HMGN1-208ENST00000443046 GNA11P29992 359 aa16.2■□□□□ 0.18
HMGN1-208ENST00000443046 XKR3Q5GH77 459 aa16.2■□□□□ 0.18
HMGN1-208ENST00000443046 RNF168Q8IYW5 571 aaPredicted RBP16.2■□□□□ 0.18
HMGN1-208ENST00000443046 RDM1Q8NG50 284 aa16.2■□□□□ 0.18
HMGN1-208ENST00000443046 CCDC12Q8WUD4 166 aaPredicted RBP16.2■□□□□ 0.18
HMGN1-208ENST00000443046 NXPE3Q969Y0 559 aa16.2■□□□□ 0.18
HMGN1-208ENST00000443046 MRPL17Q9NRX2 175 aaKnown RBP16.2■□□□□ 0.18
HMGN1-208ENST00000443046 TPRP12270 2363 aaKnown RBP16.19■□□□□ 0.18
HMGN1-208ENST00000443046 TMEM150BA6NC51 233 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 PRPF3O43395 683 aaKnown RBP16.19■□□□□ 0.18
HMGN1-208ENST00000443046 PSMD10O75832 226 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 SOD2P04179 222 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 ALDH2P05091 517 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 SSBP05455 408 aaKnown RBP eCLIP16.19■□□□□ 0.18
HMGN1-208ENST00000443046 SRFP11831 508 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 DNM2P50570 870 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 USP11P51784 963 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 ADCK5Q3MIX3 580 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 MTERF2Q49AM1 385 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 PHLDB3Q6NSJ2 640 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 KIAA2013Q8IYS2 634 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 KCNG4Q8TDN1 519 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 ZNF707Q96C28 371 aaPredicted RBP16.19■□□□□ 0.18
HMGN1-208ENST00000443046 PGBD4Q96DM1 585 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 RPS6KC1Q96S38 1066 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 GBP3Q9H0R5 595 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 IFT122Q9HBG6 1241 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 RXFP1Q9HBX9 757 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 ANO2Q9NQ90 1003 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 MAN1C1Q9NR34 630 aa16.19■□□□□ 0.18
HMGN1-208ENST00000443046 AGPAT5Q9NUQ2 364 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms