RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 SKAP1Q86WV1 359 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 LINC01465Q8N7H1 131 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 URGCPQ8TCY9 931 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 ZBTB10Q96DT7 871 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 MFSD14AQ96MC6 490 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 CCDC43Q96MW1 224 aaKnown RBP8.7□□□□□ -1.02
CD44-211ENST00000442151 LRFN3Q9BTN0 628 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 PHF20Q9BVI0 1012 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 EPHX3Q9H6B9 360 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 ZSWIM4Q9H7M6 989 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 CDHR5Q9HBB8 845 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 TYW1Q9NV66 732 aaKnown RBP8.7□□□□□ -1.02
CD44-211ENST00000442151 ORC3Q9UBD5 711 aaPredicted RBP8.7□□□□□ -1.02
CD44-211ENST00000442151 SSX2IPQ9Y2D8 614 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 NLRC5Q86WI3 1866 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 M0R2N6 131 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 CCNT1O60563 726 aaKnown RBP8.7□□□□□ -1.02
CD44-211ENST00000442151 EYA4O95677 639 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 IL9P15248 144 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 POLGP54098 1239 aaPredicted RBP8.7□□□□□ -1.02
CD44-211ENST00000442151 TFDP1Q14186 410 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 SMC1AQ14683 1233 aaKnown RBP8.7□□□□□ -1.02
CD44-211ENST00000442151 KCNT2Q6UVM3 1135 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 GLB1LQ6UWU2 654 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 CATSPER4Q7RTX7 472 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 C4orf19Q8IY42 314 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 LRRC71Q8N4P6 559 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 PSPC1Q8WXF1 523 aaKnown RBP8.7□□□□□ -1.02
CD44-211ENST00000442151 CASP10Q92851 521 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 ENTPD7Q9NQZ7 604 aa8.7□□□□□ -1.02
CD44-211ENST00000442151 IGKV6-21A0A0C4DH24 114 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 ZNF862O60290 1169 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 MGEA5O60502 916 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 PPFIA3O75145 1194 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 NR1I2O75469 434 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 LINC00271P0C7V0 271 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 XRCC6P12956 609 aaKnown RBP eCLIP8.69□□□□□ -1.02
CD44-211ENST00000442151 ATF7P17544 494 aaPredicted RBP8.69□□□□□ -1.02
CD44-211ENST00000442151 AXLP30530 894 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 NRIP1P48552 1158 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 MXD4Q14582 209 aaPredicted RBP8.69□□□□□ -1.02
CD44-211ENST00000442151 DUSP6Q16828 381 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 INF2Q27J81 1249 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 FAM102BQ5T8I3 360 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 TWF2Q6IBS0 349 aaKnown RBP8.69□□□□□ -1.02
CD44-211ENST00000442151 CES5AQ6NT32 575 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 B3GNT9Q6UX72 402 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 TMEM184AQ6ZMB5 413 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 TMC7Q7Z402 723 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 PPFIBP1Q86W92 1011 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 RHPN2Q8IUC4 686 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 ETNPPLQ8TBG4 499 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 OXER1Q8TDS5 423 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 TMEM40Q8WWA1 233 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 TMEM169Q96HH4 297 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 CEP170P1Q96L14 293 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 CASD1Q96PB1 797 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 FAM193BQ96PV7 902 aaPredicted RBP8.69□□□□□ -1.02
CD44-211ENST00000442151 UIMC1Q96RL1 719 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 PRRX2Q99811 253 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 CYP26B1Q9NR63 512 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 DPP7Q9UHL4 492 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 PCDHA12Q9UN75 941 aa8.69□□□□□ -1.02
CD44-211ENST00000442151 ZNF623O75123 536 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 TDP2O95551 362 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 ZP2Q05996 745 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 POU5F1BQ06416 359 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 SCRN1Q12765 414 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 PIK3AP1Q6ZUJ8 805 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 RNF169Q8NCN4 708 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 ZDHHC16Q969W1 377 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 CCDC51Q96ER9 411 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 ZFRQ96KR1 1074 aaKnown RBP8.68□□□□□ -1.02
CD44-211ENST00000442151 NECTIN4Q96NY8 510 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 PPP1R16BQ96T49 567 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 PHF7Q9BWX1 381 aaPredicted RBP8.68□□□□□ -1.02
CD44-211ENST00000442151 CWH43Q9H720 699 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 KCNMB3Q9NPA1 279 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 ANKEF1Q9NU02 776 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 TSR3Q9UJK0 312 aaKnown RBP8.68□□□□□ -1.02
CD44-211ENST00000442151 NR2E1Q9Y466 385 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 NCOR1O75376 2440 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 CNTNAP2Q9UHC6 1331 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 EVPLQ92817 2033 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 A0A087WZ62 844 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 PPP1R3GB7ZBB8 358 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 FSCN2O14926 492 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 ALDH2P05091 517 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 LTBRP36941 435 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 PHKA2P46019 1235 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 INSM1Q01101 510 aaPredicted RBP8.68□□□□□ -1.02
CD44-211ENST00000442151 RNASELQ05823 741 aaKnown RBP8.68□□□□□ -1.02
CD44-211ENST00000442151 ORC2Q13416 577 aaPredicted RBP8.68□□□□□ -1.02
CD44-211ENST00000442151 MSLNLQ96KJ4 702 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 TCF25Q9BQ70 676 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 FDXACB1Q9BRP7 624 aaPredicted RBP8.68□□□□□ -1.02
CD44-211ENST00000442151 IRF2BPLQ9H1B7 796 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 DZANK1Q9NVP4 752 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 KCNJ14Q9UNX9 436 aa8.68□□□□□ -1.02
CD44-211ENST00000442151 COL4A3BPQ9Y5P4 624 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms