RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 PLCB3Q01970 1234 aa9.74□□□□□ -0.85
COPB1-202ENST00000439561 DHX34Q14147 1143 aaKnown RBP9.74□□□□□ -0.85
COPB1-202ENST00000439561 EDRF1Q3B7T1 1238 aa9.74□□□□□ -0.85
COPB1-202ENST00000439561 UBAP2Q5T6F2 1119 aaKnown RBP9.74□□□□□ -0.85
COPB1-202ENST00000439561 STXBP4Q6ZWJ1 553 aa9.74□□□□□ -0.85
COPB1-202ENST00000439561 BZW1Q7L1Q6 419 aaKnown RBP9.74□□□□□ -0.85
COPB1-202ENST00000439561 ALG3Q92685 438 aa9.74□□□□□ -0.85
COPB1-202ENST00000439561 ERP27Q96DN0 273 aa9.74□□□□□ -0.85
COPB1-202ENST00000439561 C9orf72Q96LT7 481 aa9.74□□□□□ -0.85
COPB1-202ENST00000439561 TYW1Q9NV66 732 aaKnown RBP9.74□□□□□ -0.85
COPB1-202ENST00000439561 ARL2BPQ9Y2Y0 163 aa9.74□□□□□ -0.85
COPB1-202ENST00000439561 SYNGAP1Q96PV0 1343 aa9.74□□□□□ -0.85
COPB1-202ENST00000439561 PODXLO00592 558 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 CLDN3O15551 220 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 ASAP2O43150 1006 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 PHF2O75151 1096 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 PPFIA2O75334 1257 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 ATF2P15336 505 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 TAL1P17542 331 aaPredicted RBP9.73□□□□□ -0.85
COPB1-202ENST00000439561 CCND1P24385 295 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 TARSP26639 723 aaKnown RBP9.73□□□□□ -0.85
COPB1-202ENST00000439561 SCNN1DP51172 638 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 TSNAXIP1Q2TAA8 658 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 TMEM119Q4V9L6 283 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 LACTB2Q53H82 288 aaPredicted RBP9.73□□□□□ -0.85
COPB1-202ENST00000439561 RNF207Q6ZRF8 634 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 CATSPER3Q86XQ3 398 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 RPUSD2Q8IZ73 545 aaKnown RBP9.73□□□□□ -0.85
COPB1-202ENST00000439561 LNX1Q8TBB1 728 aaPredicted RBP9.73□□□□□ -0.85
COPB1-202ENST00000439561 SLC20A1Q8WUM9 679 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 HAS1Q92839 578 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 TMEM237Q96Q45 408 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 VPS37BQ9H9H4 285 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 IGSF9BQ9UPX0 1349 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 BCL9LQ86UU0 1499 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 SRRM3A6NNA2 597 aaPredicted RBP9.73□□□□□ -0.85
COPB1-202ENST00000439561 SNX3O60493 162 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 GCLMP48507 274 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 GTF2IP78347 998 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 RNASELQ05823 741 aaKnown RBP9.73□□□□□ -0.85
COPB1-202ENST00000439561 ZCWPW2Q504Y3 356 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 LONP2Q86WA8 852 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 GBP7Q8N8V2 638 aaPredicted RBP9.73□□□□□ -0.85
COPB1-202ENST00000439561 C1orf131Q8NDD1 294 aaKnown RBP9.73□□□□□ -0.85
COPB1-202ENST00000439561 ATG4AQ8WYN0 398 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 INTS2Q9H0H0 1204 aaKnown RBP9.73□□□□□ -0.85
COPB1-202ENST00000439561 CARD9Q9H257 536 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 BATF3Q9NR55 127 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 TMEM59LQ9UK28 342 aa9.73□□□□□ -0.85
COPB1-202ENST00000439561 COL1A1P02452 1464 aaPredicted RBP9.72□□□□□ -0.85
COPB1-202ENST00000439561 RASA4BC9J798 803 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 RASA4O43374 803 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 KCNQ2O43526 872 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 LUC7L3O95232 432 aaKnown RBP9.72□□□□□ -0.85
COPB1-202ENST00000439561 GAS8O95995 478 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 GH1P01241 217 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 GSTA1P08263 222 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 SLURP2P0DP57 97 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 POLE2P56282 527 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 NCALDP61601 193 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 IRX1P78414 480 aaPredicted RBP9.72□□□□□ -0.85
COPB1-202ENST00000439561 KRT17Q04695 432 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 DNAJC3Q13217 504 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 COG2Q14746 738 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 ANKRD20A2Q5SQ80 823 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 ANKRD20A1Q5TYW2 823 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 HHATQ5VTY9 493 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 ANKRD20A3Q5VUR7 823 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 ARHGEF18Q6ZSZ5 1173 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 SPDYE1Q8NFV5 336 aaPredicted RBP9.72□□□□□ -0.85
COPB1-202ENST00000439561 NUDCD1Q96RS6 583 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 RUSC1Q9BVN2 902 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 NYXQ9GZU5 481 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 CDC42EP4Q9H3Q1 356 aaKnown RBP9.72□□□□□ -0.85
COPB1-202ENST00000439561 JMJD4Q9H9V9 463 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 ANAPC5Q9UJX4 755 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 C5orf60A6NFR6 353 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 FOXN3O00409 490 aaPredicted RBP9.72□□□□□ -0.85
COPB1-202ENST00000439561 KIAA0391O15091 583 aaKnown RBP9.72□□□□□ -0.85
COPB1-202ENST00000439561 RIPK2O43353 540 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 CFBP00751 764 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 HLA-DOAP06340 250 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 TMEM253P0C7T8 217 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 MMP14P50281 582 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 IL9RQ01113 521 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 CNGA2Q16280 664 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 RFX8Q6ZV50 586 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 PALB2Q86YC2 1186 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 SLF2Q8IX21 1173 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 SLFN12Q8IYM2 578 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 SLC35C1Q96A29 364 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 ELMO3Q96BJ8 720 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 PWWP2AQ96N64 755 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 TSC22D3Q99576 134 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 KCTD10Q9H3F6 313 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 HAO1Q9UJM8 370 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 CES2O00748 559 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 TTLL1O95922 423 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 MMP13P45452 471 aa9.72□□□□□ -0.85
COPB1-202ENST00000439561 FMO5P49326 533 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms