RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 DNAJB1P25685 340 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 HSPA4P34932 840 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 IRS1P35568 1242 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 NLRP11P59045 1033 aaKnown RBP8.74□□□□□ -1.01
VPS50-204ENST00000438395 KRT17Q04695 432 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 DLX2Q07687 328 aaPredicted RBP8.74□□□□□ -1.01
VPS50-204ENST00000438395 SSRP1Q08945 709 aaKnown RBP8.74□□□□□ -1.01
VPS50-204ENST00000438395 ADAM15Q13444 863 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 EFCAB12Q6NXP0 572 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 MIER3Q7Z3K6 550 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 ADGRD2Q7Z7M1 963 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 ZBTB33Q86T24 672 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 FAM228AQ86W67 206 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 LRRC71Q8N4P6 559 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 COLGALT1Q8NBJ5 622 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 SMRP1Q8NCR6 262 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 TMEM40Q8WWA1 233 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 MFSD14AQ96MC6 490 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 CDCA3Q99618 268 aaPredicted RBP8.74□□□□□ -1.01
VPS50-204ENST00000438395 ELAC1Q9H777 363 aaKnown RBP8.74□□□□□ -1.01
VPS50-204ENST00000438395 SLC24A3Q9HC58 644 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 SH3GLB2Q9NR46 395 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 TYW1Q9NV66 732 aaKnown RBP8.74□□□□□ -1.01
VPS50-204ENST00000438395 DACT1Q9NYF0 836 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 MUTYHQ9UIF7 546 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 BARX2Q9UMQ3 279 aaPredicted RBP8.74□□□□□ -1.01
VPS50-204ENST00000438395 USP15Q9Y4E8 981 aaPredicted RBP8.74□□□□□ -1.01
VPS50-204ENST00000438395 CYP46A1Q9Y6A2 500 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 TTC3P53804 2025 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 RALGAPA2Q2PPJ7 1873 aa8.74□□□□□ -1.01
VPS50-204ENST00000438395 ST8SIA5O15466 376 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 MARCH6O60337 910 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 DGAT1O75907 488 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 CDKL5O76039 1030 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 SFPQP23246 707 aaKnown RBP eCLIP8.73□□□□□ -1.01
VPS50-204ENST00000438395 EIF4BP23588 611 aaKnown RBP8.73□□□□□ -1.01
VPS50-204ENST00000438395 CIITAP33076 1130 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 USP11P51784 963 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 CCT2P78371 535 aaKnown RBP8.73□□□□□ -1.01
VPS50-204ENST00000438395 CDC42EP1Q00587 391 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 COASYQ13057 564 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 PKN1Q16512 942 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 FAM102BQ5T8I3 360 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 PLPP4Q5VZY2 271 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 RNF135Q8IUD6 432 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 SUGP1Q8IWZ8 645 aaKnown RBP8.73□□□□□ -1.01
VPS50-204ENST00000438395 CRIPAKQ8N1N5 446 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 RDM1Q8NG50 284 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 CRYGNQ8WXF5 182 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 TCF25Q9BQ70 676 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 JPH2Q9BR39 696 aaPredicted RBP8.73□□□□□ -1.01
VPS50-204ENST00000438395 MRPL9Q9BYD2 267 aaKnown RBP8.73□□□□□ -1.01
VPS50-204ENST00000438395 GCOM2Q9BZD3 368 aaPredicted RBP8.73□□□□□ -1.01
VPS50-204ENST00000438395 NCOA5Q9HCD5 579 aaKnown RBP8.73□□□□□ -1.01
VPS50-204ENST00000438395 LZTS1Q9Y250 596 aa8.73□□□□□ -1.01
VPS50-204ENST00000438395 ZDBF2Q9HCK1 2354 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 CARNS1A5YM72 827 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 PER2O15055 1255 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 MSH4O15457 936 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 GPR32O75388 356 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 DEXIO95424 95 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 EYA4O95677 639 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 DARSP14868 501 aaKnown RBP8.72□□□□□ -1.01
VPS50-204ENST00000438395 JUNDP17535 347 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 XBP1P17861 261 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 ATP4AP20648 1035 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 PDIA3P30101 505 aaKnown RBP8.72□□□□□ -1.01
VPS50-204ENST00000438395 ALDH7A1P49419 539 aaKnown RBP8.72□□□□□ -1.01
VPS50-204ENST00000438395 CAMK1Q14012 370 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 MTERF2Q49AM1 385 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 TPRNQ4KMQ1 711 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 XKR3Q5GH77 459 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 HERC4Q5GLZ8 1057 aaPredicted RBP8.72□□□□□ -1.01
VPS50-204ENST00000438395 TWF2Q6IBS0 349 aaKnown RBP8.72□□□□□ -1.01
VPS50-204ENST00000438395 GALNT17Q6IS24 598 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 KCNT2Q6UVM3 1135 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 GLB1LQ6UWU2 654 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 KRT25Q7Z3Z0 450 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 TMC7Q7Z402 723 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 FAM177A1Q8N128 213 aaPredicted RBP8.72□□□□□ -1.01
VPS50-204ENST00000438395 TBCKQ8TEA7 893 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 RSPH1Q8WYR4 309 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 MRPS27Q92552 414 aaKnown RBP8.72□□□□□ -1.01
VPS50-204ENST00000438395 SLC5A5Q92911 643 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 KCNB2Q92953 911 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 LENG9Q96B70 501 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 TMEM169Q96HH4 297 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 ZNF668Q96K58 619 aaPredicted RBP8.72□□□□□ -1.01
VPS50-204ENST00000438395 MSLNLQ96KJ4 702 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 RPGRIP1Q96KN7 1286 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 PHF7Q9BWX1 381 aaPredicted RBP8.72□□□□□ -1.01
VPS50-204ENST00000438395 KCNH6Q9H252 994 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 SLKQ9H2G2 1235 aaPredicted RBP8.72□□□□□ -1.01
VPS50-204ENST00000438395 UNC45AQ9H3U1 944 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 NGRNQ9NPE2 291 aaKnown RBP8.72□□□□□ -1.01
VPS50-204ENST00000438395 SPG21Q9NZD8 308 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 PCDHA4Q9UN74 947 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 PCDHGC5Q9Y5F6 944 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 NLRC5Q86WI3 1866 aa8.72□□□□□ -1.01
VPS50-204ENST00000438395 CCDC194A0A1B0GVG4 234 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms