RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 VWA3AA6NCI4 1184 aa16.85■□□□□ 0.29
LIMS3-201ENST00000437679 PP2D1A8MPX8 630 aa16.85■□□□□ 0.29
LIMS3-201ENST00000437679 INO80B-WBP1J3KQ70 363 aa16.85■□□□□ 0.29
LIMS3-201ENST00000437679 CDC25AP30304 524 aa16.85■□□□□ 0.29
LIMS3-201ENST00000437679 TIGD5Q53EQ6 642 aa16.85■□□□□ 0.29
LIMS3-201ENST00000437679 ZNF598Q86UK7 904 aaKnown RBP16.85■□□□□ 0.29
LIMS3-201ENST00000437679 IFNLR1Q8IU57 520 aaPredicted RBP16.85■□□□□ 0.29
LIMS3-201ENST00000437679 CASD1Q96PB1 797 aa16.85■□□□□ 0.29
LIMS3-201ENST00000437679 NFKBIZQ9BYH8 718 aa16.85■□□□□ 0.29
LIMS3-201ENST00000437679 GPRC5CQ9NQ84 441 aa16.85■□□□□ 0.29
LIMS3-201ENST00000437679 RNF19AQ9NV58 838 aa16.85■□□□□ 0.29
LIMS3-201ENST00000437679 TYW1Q9NV66 732 aaKnown RBP16.85■□□□□ 0.29
LIMS3-201ENST00000437679 PCDHB12Q9Y5F1 795 aa16.85■□□□□ 0.29
LIMS3-201ENST00000437679 LRRIQ4A6NIV6 560 aa16.84■□□□□ 0.29
LIMS3-201ENST00000437679 GRM6O15303 877 aa16.84■□□□□ 0.29
LIMS3-201ENST00000437679 ZNF623O75123 536 aa16.84■□□□□ 0.29
LIMS3-201ENST00000437679 ATF7P17544 494 aaPredicted RBP16.84■□□□□ 0.29
LIMS3-201ENST00000437679 AXLP30530 894 aa16.84■□□□□ 0.29
LIMS3-201ENST00000437679 ZRSR1Q15695 479 aaKnown RBP16.84■□□□□ 0.29
LIMS3-201ENST00000437679 LRRC43Q8N309 656 aa16.84■□□□□ 0.29
LIMS3-201ENST00000437679 ATXN2LQ8WWM7 1075 aaKnown RBP16.84■□□□□ 0.29
LIMS3-201ENST00000437679 RSPH1Q8WYR4 309 aa16.84■□□□□ 0.29
LIMS3-201ENST00000437679 PGBD4Q96DM1 585 aa16.84■□□□□ 0.29
LIMS3-201ENST00000437679 PLAGL2Q9UPG8 496 aa16.84■□□□□ 0.29
LIMS3-201ENST00000437679 PCDHB2Q9Y5E7 798 aa16.84■□□□□ 0.29
LIMS3-201ENST00000437679 BRWD1Q9NSI6 2320 aa16.84■□□□□ 0.29
LIMS3-201ENST00000437679 TSPAN1O60635 241 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 EYA4O95677 639 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 LAG3P18627 525 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 HOXA11P31270 313 aaPredicted RBP16.83■□□□□ 0.28
LIMS3-201ENST00000437679 MBTD1Q05BQ5 628 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 SF3A1Q15459 793 aaKnown RBP16.83■□□□□ 0.28
LIMS3-201ENST00000437679 CSPP1Q1MSJ5 1256 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 CLLU1OSQ5K130 101 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 NOTUMQ6P988 496 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 ZBTB8OSQ8IWT0 167 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 KLHL23Q8NBE8 558 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 HELQQ8TDG4 1101 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 CCDC51Q96ER9 411 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 CDK5RAP3Q96JB5 506 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 AK8Q96MA6 479 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 MMTAG2Q9BU76 263 aaKnown RBP16.83■□□□□ 0.28
LIMS3-201ENST00000437679 MRPL9Q9BYD2 267 aaKnown RBP16.83■□□□□ 0.28
LIMS3-201ENST00000437679 NSUN3Q9H649 340 aaKnown RBP16.83■□□□□ 0.28
LIMS3-201ENST00000437679 ALG13Q9NP73 1137 aaKnown RBP16.83■□□□□ 0.28
LIMS3-201ENST00000437679 COG5Q9UP83 839 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 A0A0C4DFX4 3053 aa16.83■□□□□ 0.28
LIMS3-201ENST00000437679 E9PMD0 336 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 ITGB1P05556 798 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 HSP90AA1P07900 732 aaKnown RBP16.82■□□□□ 0.28
LIMS3-201ENST00000437679 MRPS5P82675 430 aaKnown RBP16.82■□□□□ 0.28
LIMS3-201ENST00000437679 RESTQ13127 1097 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 PPP2R5AQ15172 486 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 LONRF3Q496Y0 759 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 GLB1LQ6UWU2 654 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 THNSL1Q8IYQ7 743 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 KCTD17Q8N5Z5 321 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 COLGALT1Q8NBJ5 622 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 KIFAP3Q92845 792 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 LPPQ93052 612 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 IFT74Q96LB3 600 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 NT5C3AQ9H0P0 336 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 C2orf40Q9H1Z8 148 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 CWH43Q9H720 699 aa16.82■□□□□ 0.28
LIMS3-201ENST00000437679 SLC26A4O43511 780 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 STX6O43752 255 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 UBA7P41226 1012 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 NAMPTP43490 491 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 AAK1Q2M2I8 961 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 HYIQ5T013 277 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 UBXN11Q5T124 520 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 LRRC55Q6ZSA7 311 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 CABP7Q86V35 215 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 CNNM3Q8NE01 707 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 DEPTORQ8TB45 409 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 SPPL3Q8TCT6 385 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 HLA-CQ95604 372 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 CPB2Q96IY4 423 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 ZNF558Q96NG5 402 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 HCSTQ9UBK5 93 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 MTMR6Q9Y217 621 aa16.81■□□□□ 0.28
LIMS3-201ENST00000437679 FGF18O76093 207 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 CSPG5O95196 566 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 ARF4P18085 180 aaPredicted RBP16.8■□□□□ 0.28
LIMS3-201ENST00000437679 LONP1P36776 959 aaKnown RBP16.8■□□□□ 0.28
LIMS3-201ENST00000437679 UBE3AQ05086 875 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 AMHR2Q16671 573 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 TCEAL5Q5H9L2 206 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 NOMO2Q5JPE7 1267 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 TJAP1Q5JTD0 557 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 CDCA2Q69YH5 1023 aaPredicted RBP16.8■□□□□ 0.28
LIMS3-201ENST00000437679 MRPL10Q7Z7H8 261 aaKnown RBP16.8■□□□□ 0.28
LIMS3-201ENST00000437679 POF1BQ8WVV4 589 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 BSNDQ8WZ55 320 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 CALML4Q96GE6 196 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 PRIMPOLQ96LW4 560 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 PNMA5Q96PV4 448 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 ASB2Q96Q27 587 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 PLIN2Q99541 437 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 TRIM6Q9C030 488 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms