RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 USP17L10C9JJH3 530 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 PI4K2BG5E9Z4 385 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 FOXP4Q8IVH2 680 aaPredicted RBP12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 RNF146Q9NTX7 359 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 DNAJC17Q9NVM6 304 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 FAM133BQ5BKY9 247 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 OR6J1Q8NGC5 347 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 ASIC4Q96FT7 647 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 ZNF668Q96K58 619 aaPredicted RBP12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 BRIP1Q9BX63 1249 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 ADAM22Q9P0K1 906 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 NRBP1Q9UHY1 535 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 LCP1P13796 627 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 GINM1Q9NU53 330 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 SENP1Q9P0U3 644 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 TJP2Q9UDY2 1190 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 CPB1P15086 417 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 LIG3P49916 1009 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 KRT39Q6A163 491 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 NDST4Q9H3R1 872 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 GTSE1Q9NYZ3 720 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 GCLMP48507 274 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 SMAD1Q15797 465 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 TAS2R42Q7RTR8 314 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 TMEM106CQ9BVX2 250 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 CYP26B1Q9NR63 512 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 RIMBP3CA6NJZ7 1639 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 RIMBP3BA6NNM3 1639 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 RIMBP3Q9UFD9 1639 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 KDM6AO15550 1401 aaPredicted RBP12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 TRPV6Q9H1D0 765 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 ACAD9Q9H845 621 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 NARFQ9UHQ1 456 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 FAF1Q9UNN5 650 aaPredicted RBP12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 RASGRF2O14827 1237 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 TMEM259Q4ZIN3 620 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 CHAMP1Q96JM3 812 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 NEXMIFQ5QGS0 1516 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 SRGAP2O75044 1071 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 LCMT1Q9UIC8 334 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 VEPH1Q14D04 833 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 MINPP1Q9UNW1 487 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 POTEB3A0JP26 581 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 POTECB2RU33 542 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 SFNP31947 248 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 CCT5P48643 541 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 CACNB2Q08289 660 aaPredicted RBP12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 POTEBQ6S5H4 581 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 SLC44A5Q8NCS7 719 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 NEUROG2Q9H2A3 272 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 SAMSN1Q9NSI8 373 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 L3MBTL1Q9Y468 752 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 KITP10721 976 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 APBA1Q02410 837 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 LBRQ14739 615 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 SAAL1Q96ER3 474 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 KIF12Q96FN5 646 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 TBC1D22BQ9NU19 505 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 CPSF1Q10570 1443 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 ADRA2BP18089 450 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 GNA15P30679 374 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 RWDD2BP57060 319 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 COASYQ13057 564 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 SMAP1Q8IYB5 467 aaPredicted RBP12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 UPF3AQ9H1J1 476 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 KIDINS220Q9ULH0 1771 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 CFAP69A5D8W1 941 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 IPO5O00410 1097 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 PPP2R3CQ969Q6 453 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 EGFL8Q99944 293 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 ARL4CP56559 192 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 XXYLT1Q8NBI6 393 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 GIPC2Q8TF65 315 aa12.84□□□□□ -0.35
CCDC88A-207ENST00000436346 THEMIS2Q5TEJ8 643 aa12.83□□□□□ -0.35
CCDC88A-207ENST00000436346 PPP1R18Q6NYC8 613 aa12.83□□□□□ -0.35
CCDC88A-207ENST00000436346 AIFM3Q96NN9 605 aa12.83□□□□□ -0.35
CCDC88A-207ENST00000436346 GCOM2Q9BZD3 368 aaPredicted RBP12.83□□□□□ -0.35
CCDC88A-207ENST00000436346 HOXA7P31268 230 aaPredicted RBP12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 LIFRP42702 1097 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 VCPP55072 806 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 NUDT18Q6ZVK8 323 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 LCA5Q86VQ0 697 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 SAYSD1Q9NPB0 183 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 TRIM33Q9UPN9 1127 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 ZC3H4Q9UPT8 1303 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 PALMO75781 387 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 HMGCS2P54868 508 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 ESRRGP62508 458 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 SWSAP1Q6NVH7 229 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 BRINP3Q76B58 766 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 ENAHQ8N8S7 591 aaPredicted RBP12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 TTLL11Q8NHH1 800 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 SYNDIG1LA6NDD5 238 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 SRPK1Q96SB4 655 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 SMYD3Q9H7B4 428 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 RBM41Q96IZ5 413 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 PANX2Q96RD6 677 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 NDFIP2Q9NV92 336 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 TNPO2O14787 897 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 NDUFA10O95299 355 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms