RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 TEKT3Q9BXF9 490 aa12.23□□□□□ -0.45
USP4-205ENST00000431357 CNOT10Q9H9A5 744 aaKnown RBP12.23□□□□□ -0.45
USP4-205ENST00000431357 POLD4Q9HCU8 107 aa12.23□□□□□ -0.45
USP4-205ENST00000431357 RASAL2Q9UJF2 1139 aa12.23□□□□□ -0.45
USP4-205ENST00000431357 PPP1R9AQ9ULJ8 1098 aa12.23□□□□□ -0.45
USP4-205ENST00000431357 MRPL11Q9Y3B7 192 aaKnown RBP12.23□□□□□ -0.45
USP4-205ENST00000431357 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.23□□□□□ -0.45
USP4-205ENST00000431357 CHMP2AO43633 222 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 EXOC3O60645 756 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 GGPS1O95749 300 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 CFBP00751 764 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 COG2Q14746 738 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 PLCB4Q15147 1175 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 DUPD1Q68J44 220 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 C11orf63Q6NUN7 778 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 INTS8Q75QN2 995 aaKnown RBP12.22□□□□□ -0.45
USP4-205ENST00000431357 CROCCP2Q86T23 111 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 HOOK3Q86VS8 718 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 SYCP3Q8IZU3 236 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 OR2W6PQ8NHA6 318 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 TXLNGYQ9BZA5 131 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 TMEM206Q9H813 350 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 HERC5Q9UII4 1024 aaKnown RBP12.22□□□□□ -0.45
USP4-205ENST00000431357 PCDHAC2Q9Y5I4 1007 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 SYNGAP1Q96PV0 1343 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 ARHGEF35A5YM69 484 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 TRAPPC3O43617 180 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 VIL1P09327 827 aaKnown RBP12.22□□□□□ -0.45
USP4-205ENST00000431357 ABCB4P21439 1286 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 POLD1P28340 1107 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 FLT3P36888 993 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 SEC24CP53992 1094 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 MAP2K1Q02750 393 aaPredicted RBP12.22□□□□□ -0.45
USP4-205ENST00000431357 IFFO1Q0D2I5 559 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 KRT71Q3SY84 523 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 UBL4BQ8N7F7 174 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 PRPF38AQ8NAV1 312 aaKnown RBP12.22□□□□□ -0.45
USP4-205ENST00000431357 CHURC1Q8WUH1 139 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 ZNF577Q9BSK1 485 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 CELF4Q9BZC1 486 aaKnown RBP12.22□□□□□ -0.45
USP4-205ENST00000431357 DPH5Q9H2P9 285 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 GOPCQ9HD26 462 aa12.22□□□□□ -0.45
USP4-205ENST00000431357 NOVA2Q9UNW9 492 aaKnown RBP12.22□□□□□ -0.45
USP4-205ENST00000431357 IGSF9BQ9UPX0 1349 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 A0A1W2PRG0 241 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 ECE2O60344 883 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 NUDT17P0C025 328 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 TRIM49P0CI25 452 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 TRIM49CP0CI26 452 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 FNTAP49354 379 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 PRPF4BQ13523 1007 aaKnown RBP12.21□□□□□ -0.45
USP4-205ENST00000431357 ARHGAP44Q17R89 818 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 DCAF12L1Q5VU92 463 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 C6orf89Q6UWU4 347 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 B3GNT9Q6UX72 402 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 C12orf56Q8IXR9 622 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 ATP8B4Q8TF62 1192 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 CENPTQ96BT3 561 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 ARHGEF26Q96DR7 871 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 CYFIP2Q96F07 1278 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 RUNDC3BQ96NL0 473 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 RPS6KC1Q96S38 1066 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 PSMD1Q99460 953 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 RIT2Q99578 217 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 THAP2Q9H0W7 228 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 RANBP17Q9H2T7 1088 aaKnown RBP12.21□□□□□ -0.45
USP4-205ENST00000431357 UNC45AQ9H3U1 944 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 PPANQ9NQ55 473 aaKnown RBP12.21□□□□□ -0.45
USP4-205ENST00000431357 PARP2Q9UGN5 583 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 TMX2Q9Y320 296 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 CAPN7Q9Y6W3 813 aa12.21□□□□□ -0.45
USP4-205ENST00000431357 C5orf60A6NFR6 353 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 UBAP1LF5GYI3 381 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 H0YHG0 523 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 FOXN3O00409 490 aaPredicted RBP12.2□□□□□ -0.46
USP4-205ENST00000431357 PODXLO00592 558 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 KIF3CO14782 793 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 MAPK13O15264 365 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 PLA2G6O60733 806 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 CHRNA3P32297 505 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 SNRPFP62306 86 aaKnown RBP12.2□□□□□ -0.46
USP4-205ENST00000431357 GPC5P78333 572 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 JAG1P78504 1218 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 KIAA1755Q5JYT7 1200 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 CC2D2BQ6DHV5 1058 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 PHLDB3Q6NSJ2 640 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 PROCA1Q8NCQ7 364 aaPredicted RBP12.2□□□□□ -0.46
USP4-205ENST00000431357 LMO3Q8TAP4 145 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 KAT2BQ92831 832 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 TLCD1Q96CP7 247 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 CEP89Q96ST8 783 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 IKZF4Q9H2S9 585 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 ACTR5Q9H9F9 607 aaPredicted RBP12.2□□□□□ -0.46
USP4-205ENST00000431357 ZDHHC18Q9NUE0 388 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 SEPT11Q9NVA2 429 aaKnown RBP12.2□□□□□ -0.46
USP4-205ENST00000431357 LARSQ9P2J5 1176 aaKnown RBP12.2□□□□□ -0.46
USP4-205ENST00000431357 ALG6Q9Y672 507 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 PMM2O15305 246 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 HIP1RO75146 1068 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 PHF2O75151 1096 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms