RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 TBC1D22BQ9NU19 505 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 FGFR1OP2Q9NVK5 253 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 RRP15Q9Y3B9 282 aaKnown RBP16.4■□□□□ 0.22
PTPRF-206ENST00000429895 POTEFA5A3E0 1075 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 CALB1P05937 261 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 POTEIP0CG38 1075 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 TMED1Q13445 227 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 RCSD1Q6JBY9 416 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 POTEGQ6S5H5 508 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 POTEEQ6S8J3 1075 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 MLXIPLQ9NP71 852 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 DYRK4Q9NR20 520 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 KIF17Q9P2E2 1029 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 RASA4BC9J798 803 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 RASA4O43374 803 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 RPS6KA4O75676 772 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 TRIML2Q8N7C3 387 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 GCOM2Q9BZD3 368 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-206ENST00000429895 APOBEC2Q9Y235 224 aaKnown RBP16.4■□□□□ 0.22
PTPRF-206ENST00000429895 MINPP1Q9UNW1 487 aa16.39■□□□□ 0.22
PTPRF-206ENST00000429895 LRRC53A6NM62 1247 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 MFAP3LO75121 409 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 TADA3O75528 432 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 VAMP7P51809 220 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 POLE2P56282 527 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 TFDP2Q14188 446 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 RESP18Q5W5W9 173 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 OXER1Q8TDS5 423 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 RAPGEF5Q92565 580 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 KIF12Q96FN5 646 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 YIPF2Q9BWQ6 316 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 SCOCQ9UIL1 159 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 SPARCL1Q14515 664 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 DGKHQ86XP1 1220 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 PPM1NQ8N819 430 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 DHX35Q9H5Z1 703 aaKnown RBP16.39■□□□□ 0.21
PTPRF-206ENST00000429895 KIAA1586Q9HCI6 787 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 ZNF212Q9UDV6 495 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 NLRP1Q9C000 1473 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 ATXN7L3BQ96GX2 97 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 CD209Q9NNX6 404 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 CEP72Q9P209 647 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 ERBB3P21860 1342 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 KRT76Q01546 638 aa16.39■□□□□ 0.21
PTPRF-206ENST00000429895 HEATR6Q6AI08 1181 aaKnown RBP16.39■□□□□ 0.21
PTPRF-206ENST00000429895 WDR75Q8IWA0 830 aaKnown RBP16.39■□□□□ 0.21
PTPRF-206ENST00000429895 ZNF564Q8TBZ8 553 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-206ENST00000429895 KPNA7A9QM74 516 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 TBC1D1Q86TI0 1168 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-206ENST00000429895 TAGAPQ8N103 731 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 RMDN1Q96DB5 314 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 MAGEB5Q9BZ81 275 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 HLA-DPA1P20036 260 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 EIF3BP55884 814 aaKnown RBP16.38■□□□□ 0.21
PTPRF-206ENST00000429895 CUL1Q13616 776 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 EFHC2Q5JST6 749 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 STAP1Q9ULZ2 295 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 PRAMEP78395 509 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 PFKFB3Q16875 520 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-206ENST00000429895 APOBEC3FQ8IUX4 373 aaKnown RBP16.38■□□□□ 0.21
PTPRF-206ENST00000429895 MRPL4Q9BYD3 311 aaKnown RBP16.38■□□□□ 0.21
PTPRF-206ENST00000429895 STRIP2Q9ULQ0 834 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 MYO3BQ8WXR4 1341 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 ZSCAN9O15535 394 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-206ENST00000429895 KRT38O76015 456 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 SYF2O95926 243 aaKnown RBP16.38■□□□□ 0.21
PTPRF-206ENST00000429895 GRIK1P39086 918 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 BTBD8Q5XKL5 378 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 ALS2CLQ60I27 953 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 ANKRD40Q6AI12 368 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 OR6P1Q8NGX9 317 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 INTS2Q9H0H0 1204 aaKnown RBP16.38■□□□□ 0.21
PTPRF-206ENST00000429895 OSBPL3Q9H4L5 887 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 CLCA2Q9UQC9 943 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 SLC4A7Q9Y6M7 1214 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 SYCE1LA8MT33 242 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 KCNH2Q12809 1159 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 HIBCHQ6NVY1 386 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-206ENST00000429895 CC2D1AQ6P1N0 951 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-206ENST00000429895 EPM2AIP1Q7L775 607 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-206ENST00000429895 ADGRF4Q8IZF3 695 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 OTULINQ96BN8 352 aa16.38■□□□□ 0.21
PTPRF-206ENST00000429895 GTPBP10A4D1E9 387 aaKnown RBP16.37■□□□□ 0.21
PTPRF-206ENST00000429895 SPAG7O75391 227 aa16.37■□□□□ 0.21
PTPRF-206ENST00000429895 CYP2E1P05181 493 aaPredicted RBP16.37■□□□□ 0.21
PTPRF-206ENST00000429895 MMEP08473 750 aa16.37■□□□□ 0.21
PTPRF-206ENST00000429895 RAET1EQ8TD07 263 aa16.37■□□□□ 0.21
PTPRF-206ENST00000429895 SMARCA1P28370 1054 aa16.37■□□□□ 0.21
PTPRF-206ENST00000429895 MDM2Q00987 491 aaPredicted RBP16.37■□□□□ 0.21
PTPRF-206ENST00000429895 FAM102AQ5T9C2 384 aaPredicted RBP16.37■□□□□ 0.21
PTPRF-206ENST00000429895 LMBRD2Q68DH5 695 aaPredicted RBP16.37■□□□□ 0.21
PTPRF-206ENST00000429895 ZNF507Q8TCN5 953 aa16.37■□□□□ 0.21
PTPRF-206ENST00000429895 AGR3Q8TD06 166 aa16.37■□□□□ 0.21
PTPRF-206ENST00000429895 SLC13A1Q9BZW2 595 aa16.37■□□□□ 0.21
PTPRF-206ENST00000429895 C2orf40Q9H1Z8 148 aa16.37■□□□□ 0.21
PTPRF-206ENST00000429895 CYP26B1Q9NR63 512 aa16.37■□□□□ 0.21
PTPRF-206ENST00000429895 PODXLO00592 558 aa16.37■□□□□ 0.21
PTPRF-206ENST00000429895 CTIFO43310 598 aaKnown RBP16.37■□□□□ 0.21
PTPRF-206ENST00000429895 ASMTLO95671 621 aa16.37■□□□□ 0.21
PTPRF-206ENST00000429895 SERPIND1P05546 499 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms