RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SUPT3HB4E1H0 165 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 SPAG7O75391 227 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 HIST1H2AGP0C0S8 130 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 IMPDH2P12268 514 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 HIST1H2ADP20671 130 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 DAB2P98082 770 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 KRT17Q04695 432 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 HIST1H2AHQ96KK5 128 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 HIST1H2AJQ99878 128 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 H2AFJQ9BTM1 129 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 EVA1BQ9NVM1 165 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.29□□□□□ -1.243e-7■■■□□ 19
SCN1A-204ENST00000423058 MYBL1P10243 752 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 PLTPP55058 493 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 KRT76Q01546 638 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 RHPN2Q8IUC4 686 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 NEK9Q8TD19 979 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 RMDN1Q96DB5 314 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 WRNIP1Q96S55 665 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 POLE3Q9NRF9 147 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 EMILIN3Q9NT22 766 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 AFF4Q9UHB7 1163 aaKnown RBP7.28□□□□□ -1.24
SCN1A-204ENST00000423058 TBK1Q9UHD2 729 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 ZHX2Q9Y6X8 837 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 APOA4P06727 396 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 TRPC1P48995 793 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 NEK2P51955 445 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 TP53BP2Q13625 1128 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 ZSCAN26Q16670 478 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 UNC45AQ9H3U1 944 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 ARAP3Q8WWN8 1544 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 ORC4O43929 436 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 GRIN3BO60391 1043 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 CDC25BP30305 580 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 ALDH1A3P47895 512 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 G2E3Q7L622 706 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 CLASP1Q7Z460 1538 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 UBA6A0AVT1 1052 aaPredicted RBP7.28□□□□□ -1.24
SCN1A-204ENST00000423058 LRRC53A6NM62 1247 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 SERPIND1P05546 499 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 CDH2P19022 906 aaPredicted RBP7.28□□□□□ -1.24
SCN1A-204ENST00000423058 PSMC1P62191 440 aaKnown RBP7.28□□□□□ -1.24
SCN1A-204ENST00000423058 CCDC85BQ15834 202 aaPredicted RBP7.28□□□□□ -1.24
SCN1A-204ENST00000423058 ME3Q16798 604 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 GRAMD4Q6IC98 578 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 BRIP1Q9BX63 1249 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 EPB41L5Q9HCM4 733 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.28□□□□□ -1.24
SCN1A-204ENST00000423058 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.28□□□□□ -1.24
SCN1A-204ENST00000423058 CARMIL3Q8ND23 1372 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 CROCC2H7BZ55 1655 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 ABCB11O95342 1321 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 EIF2AK2P19525 551 aaKnown RBP7.28□□□□□ -1.24
SCN1A-204ENST00000423058 TMPRSS15P98073 1019 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 KRT24Q2M2I5 525 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 IER5Q5VY09 327 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 ENOSF1Q7L5Y1 443 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 CHMP1BQ7LBR1 199 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 ENGASEQ8NFI3 743 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 GREM2Q9H772 168 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 SPATS2LQ9NUQ6 558 aaKnown RBP7.28□□□□□ -1.24
SCN1A-204ENST00000423058 TMEM161AQ9NX61 479 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 HEY1Q9Y5J3 304 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 DFFAO00273 331 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 NME3Q13232 169 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 PROM2Q8N271 834 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 FAM133AQ8N9E0 248 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 RAPGEF5Q92565 580 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 GPR108Q9NPR9 543 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 IP6K2Q9UHH9 426 aa7.28□□□□□ -1.24
SCN1A-204ENST00000423058 ADAMTS12P58397 1594 aa7.27□□□□□ -1.24
SCN1A-204ENST00000423058 PRR23D1E9PI22 279 aaPredicted RBP7.27□□□□□ -1.24
SCN1A-204ENST00000423058 TLR2O60603 784 aa7.27□□□□□ -1.24
SCN1A-204ENST00000423058 PRR23D2P0DMB1 279 aaPredicted RBP7.27□□□□□ -1.24
SCN1A-204ENST00000423058 VCLP18206 1134 aa7.27□□□□□ -1.24
SCN1A-204ENST00000423058 SDC4P31431 198 aa7.27□□□□□ -1.24
SCN1A-204ENST00000423058 PRELPP51888 382 aa7.27□□□□□ -1.24
SCN1A-204ENST00000423058 ZNF445P59923 1031 aa7.27□□□□□ -1.24
SCN1A-204ENST00000423058 AMPD2Q01433 879 aa7.27□□□□□ -1.24
SCN1A-204ENST00000423058 GRAPQ13588 217 aa7.27□□□□□ -1.24
SCN1A-204ENST00000423058 LRRC8AQ8IWT6 810 aa7.27□□□□□ -1.24
SCN1A-204ENST00000423058 OR6J1Q8NGC5 347 aa7.27□□□□□ -1.24
SCN1A-204ENST00000423058 UHMK1Q8TAS1 419 aaKnown RBP7.27□□□□□ -1.24
SCN1A-204ENST00000423058 GRAPLQ8TC17 118 aaPredicted RBP7.27□□□□□ -1.24
SCN1A-204ENST00000423058 USP13Q92995 863 aaPredicted RBP7.27□□□□□ -1.24
SCN1A-204ENST00000423058 TSPAN17Q96FV3 270 aa7.27□□□□□ -1.24
SCN1A-204ENST00000423058 TMEM60Q9H2L4 133 aa7.27□□□□□ -1.24
SCN1A-204ENST00000423058 ZFYVE28Q9HCC9 887 aa7.27□□□□□ -1.24
SCN1A-204ENST00000423058 ADAM22Q9P0K1 906 aa7.27□□□□□ -1.24
SCN1A-204ENST00000423058 SAMD9Q5K651 1589 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 APOA1P02647 267 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 IFNAR2P48551 515 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 TBC1D10BQ4KMP7 808 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-204ENST00000423058 TTC17Q96AE7 1141 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 SLC38A7Q9NVC3 462 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 UTP6Q9NYH9 597 aaKnown RBP7.27□□□□□ -1.25
SCN1A-204ENST00000423058 LAMC1P11047 1609 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 ABCC2Q92887 1545 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 USP17L10C9JJH3 530 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 H0Y626 953 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms