RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 NR2F2P24468 414 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 CST5P28325 142 aaPredicted RBP18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 MTIF2P46199 727 aaKnown RBP18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 EFNA5P52803 228 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 UBASH3AP57075 661 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 NKX3-2P78367 333 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 CAPSQ13938 189 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 CCDC40Q4G0X9 1142 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 ZCWPW2Q504Y3 356 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 FAM47CQ5HY64 1035 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 CXCL17Q6UXB2 119 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 DRC7Q8IY82 874 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 VTI1AQ96AJ9 217 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 CNOT6LQ96LI5 555 aaKnown RBP18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 NLRP4Q96MN2 994 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 IFNKQ9P0W0 207 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 TBX20Q9UMR3 447 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 SIP14410 1827 aa18.8■□□□□ 0.6
CCDC28B-202ENST00000421922 ZMYM2Q9UBW7 1377 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 K7ERI5 159 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 PES1O00541 588 aaKnown RBP18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 NR3C1P04150 777 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 ASGR1P07306 291 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 SRGAP2CP0DJJ0 459 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 PHKA2P46019 1235 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 ZNF75DP51815 510 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 SNRPFP62306 86 aaKnown RBP18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 KCNA1Q09470 495 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 ADAM9Q13443 819 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 DRP2Q13474 957 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 KCNA10Q16322 511 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 TCP11X2Q5H9J9 407 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 MAP4K3Q8IVH8 894 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 RNF149Q8NC42 400 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 STRA6Q9BX79 667 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 HSD3B7Q9H2F3 369 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 ARHGAP28Q9P2N2 729 aa18.79■□□□□ 0.6
CCDC28B-202ENST00000421922 SCN10AQ9Y5Y9 1956 aa18.78■□□□□ 0.6
CCDC28B-202ENST00000421922 CABYRO75952 493 aa18.78■□□□□ 0.6
CCDC28B-202ENST00000421922 CYP2C9P11712 490 aa18.78■□□□□ 0.6
CCDC28B-202ENST00000421922 TMEM132AQ24JP5 1023 aa18.78■□□□□ 0.6
CCDC28B-202ENST00000421922 ARRDC4Q8NCT1 418 aa18.78■□□□□ 0.6
CCDC28B-202ENST00000421922 KLHDC9Q8NEP7 349 aa18.78■□□□□ 0.6
CCDC28B-202ENST00000421922 ADGRA3Q8IWK6 1321 aa18.78■□□□□ 0.6
CCDC28B-202ENST00000421922 GOLGA6L6A8MZA4 724 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 HNRNPDLO14979 420 aaKnown RBP18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 CLIC2O15247 247 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 EPB41P11171 864 aaKnown RBP18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 PRKCSHP14314 528 aaPredicted RBP18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 HOXD13P35453 343 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 LIG4P49917 911 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 CYP2J2P51589 502 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 MKRN4PQ13434 485 aaPredicted RBP18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 KRT31Q15323 416 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 CEP135Q66GS9 1140 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 ARMCX5Q6P1M9 558 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 CTU1Q7Z7A3 348 aaKnown RBP18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 FILIP1Q7Z7B0 1213 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 ZBTB10Q96DT7 871 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 EEF2KMTQ96G04 330 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 XPO4Q9C0E2 1151 aaKnown RBP18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 FAM49AQ9H0Q0 323 aaPredicted RBP18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 TMEM134Q9H6X4 195 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 AGPAT3Q9NRZ7 376 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 HDAC6Q9UBN7 1215 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 LIMA1Q9UHB6 759 aaKnown RBP18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 FRMD4BQ9Y2L6 1034 aa18.77■□□□□ 0.6
CCDC28B-202ENST00000421922 MOXD2PA6NHM9 499 aa18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 KBTBD13C9JR72 458 aa18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 MATR3P43243 847 aaKnown RBP eCLIP18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 CDC42EP1Q00587 391 aa18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 HSP90AA2PQ14568 343 aaPredicted RBP18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 NFIL3Q16649 462 aa18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 MAPK6Q16659 721 aa18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 NBPF20Q3BBV1 942 aa18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 MARCH8Q5T0T0 291 aa18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 LRRC55Q6ZSA7 311 aa18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 NLRP7Q8WX94 980 aa18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 MRFAP1L1Q96HT8 127 aa18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 TAB2Q9NYJ8 693 aa18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 TRIP12Q14669 1992 aaPredicted RBP18.76■□□□□ 0.59
CCDC28B-202ENST00000421922 SMIM35A0A1B0GVV1 85 aa18.75■□□□□ 0.59
CCDC28B-202ENST00000421922 N4BP3O15049 544 aa18.75■□□□□ 0.59
CCDC28B-202ENST00000421922 SLC16A3O15427 465 aaKnown RBP18.75■□□□□ 0.59
CCDC28B-202ENST00000421922 TGFB1I1O43294 461 aa18.75■□□□□ 0.59
CCDC28B-202ENST00000421922 AP5Z1O43299 807 aa18.75■□□□□ 0.59
CCDC28B-202ENST00000421922 VTNP04004 478 aa18.75■□□□□ 0.59
CCDC28B-202ENST00000421922 PTMAP06454 111 aaKnown RBP18.75■□□□□ 0.59
CCDC28B-202ENST00000421922 CDCA2Q69YH5 1023 aaPredicted RBP18.75■□□□□ 0.59
CCDC28B-202ENST00000421922 LINC01465Q8N7H1 131 aa18.75■□□□□ 0.59
CCDC28B-202ENST00000421922 PPP1R13LQ8WUF5 828 aa18.75■□□□□ 0.59
CCDC28B-202ENST00000421922 GLT1D1Q96MS3 346 aa18.75■□□□□ 0.59
CCDC28B-202ENST00000421922 TSEN34Q9BSV6 310 aaKnown RBP18.75■□□□□ 0.59
CCDC28B-202ENST00000421922 MBLAC1A4D2B0 266 aaPredicted RBP18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 INO80B-WBP1J3KQ70 363 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 EXOC3O60645 756 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 MYCP01106 439 aaPredicted RBP18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 PRKCBP05771 671 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms