RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-208ENST00000417285 LYPLA2O95372 231 aa28.28■■■□□ 2.12
VEGFA-208ENST00000417285 SRGAP2CP0DJJ0 459 aa28.28■■■□□ 2.12
VEGFA-208ENST00000417285 LAMTOR4Q0VGL1 99 aa28.28■■■□□ 2.12
VEGFA-208ENST00000417285 CTTNQ14247 550 aaKnown RBP28.28■■■□□ 2.12
VEGFA-208ENST00000417285 SAFBQ15424 915 aaKnown RBP eCLIP28.28■■■□□ 2.12
VEGFA-208ENST00000417285 DUSP6Q16828 381 aa28.28■■■□□ 2.12
VEGFA-208ENST00000417285 TMEM143Q96AN5 459 aa28.28■■■□□ 2.12
VEGFA-208ENST00000417285 HSD17B14Q9BPX1 270 aa28.28■■■□□ 2.12
VEGFA-208ENST00000417285 LLPHQ9BRT6 129 aaKnown RBP28.28■■■□□ 2.12
VEGFA-208ENST00000417285 PER2O15055 1255 aa28.27■■■□□ 2.12
VEGFA-208ENST00000417285 GLB1LQ6UWU2 654 aa28.27■■■□□ 2.12
VEGFA-208ENST00000417285 CCDC83Q8IWF9 413 aa28.27■■■□□ 2.12
VEGFA-208ENST00000417285 SMRP1Q8NCR6 262 aa28.27■■■□□ 2.12
VEGFA-208ENST00000417285 PGBD4Q96DM1 585 aa28.27■■■□□ 2.12
VEGFA-208ENST00000417285 ZSCAN31Q96LW9 406 aaPredicted RBP28.27■■■□□ 2.12
VEGFA-208ENST00000417285 TCF25Q9BQ70 676 aa28.27■■■□□ 2.12
VEGFA-208ENST00000417285 EIF2AK1Q9BQI3 630 aaKnown RBP28.27■■■□□ 2.12
VEGFA-208ENST00000417285 TTC12Q9H892 705 aaPredicted RBP28.27■■■□□ 2.12
VEGFA-208ENST00000417285 FAM105AQ9NUU6 356 aa28.27■■■□□ 2.12
VEGFA-208ENST00000417285 KIAA1671Q9BY89 1806 aa28.27■■■□□ 2.12
VEGFA-208ENST00000417285 SRGAP2BP0DMP2 458 aa28.26■■■□□ 2.11
VEGFA-208ENST00000417285 CYP4A11Q02928 519 aa28.26■■■□□ 2.11
VEGFA-208ENST00000417285 MXD4Q14582 209 aaPredicted RBP28.26■■■□□ 2.11
VEGFA-208ENST00000417285 BMS1Q14692 1282 aaKnown RBP28.26■■■□□ 2.11
VEGFA-208ENST00000417285 EMC2Q15006 297 aa28.26■■■□□ 2.11
VEGFA-208ENST00000417285 PCBP1Q15365 356 aaKnown RBP eCLIP28.26■■■□□ 2.114e-7■■□□□ 11.7
VEGFA-208ENST00000417285 TMEM184AQ6ZMB5 413 aa28.26■■■□□ 2.11
VEGFA-208ENST00000417285 TMC7Q7Z402 723 aa28.26■■■□□ 2.11
VEGFA-208ENST00000417285 ENTPD7Q9NQZ7 604 aa28.26■■■□□ 2.11
VEGFA-208ENST00000417285 ANKEF1Q9NU02 776 aa28.26■■■□□ 2.11
VEGFA-208ENST00000417285 AGPAT5Q9NUQ2 364 aa28.26■■■□□ 2.11
VEGFA-208ENST00000417285 NEMFO60524 1076 aa28.25■■■□□ 2.11
VEGFA-208ENST00000417285 FERMT3Q86UX7 667 aa28.25■■■□□ 2.11
VEGFA-208ENST00000417285 SLC39A11Q8N1S5 342 aa28.25■■■□□ 2.11
VEGFA-208ENST00000417285 MTMR9Q96QG7 549 aa28.25■■■□□ 2.11
VEGFA-208ENST00000417285 SH2B1Q9NRF2 756 aaPredicted RBP28.25■■■□□ 2.11
VEGFA-208ENST00000417285 ZBTB39O15060 712 aa28.24■■■□□ 2.11
VEGFA-208ENST00000417285 DCXO43602 365 aa28.24■■■□□ 2.11
VEGFA-208ENST00000417285 GLP2RO95838 553 aa28.24■■■□□ 2.11
VEGFA-208ENST00000417285 XRCC6P12956 609 aaKnown RBP eCLIP28.24■■■□□ 2.111e-10■□□□□ 8.4
VEGFA-208ENST00000417285 TXKP42681 527 aa28.24■■■□□ 2.11
VEGFA-208ENST00000417285 MTRQ99707 1265 aa28.24■■■□□ 2.11
VEGFA-208ENST00000417285 BARX2Q9UMQ3 279 aaPredicted RBP28.24■■■□□ 2.11
VEGFA-208ENST00000417285 PCDHB2Q9Y5E7 798 aa28.24■■■□□ 2.11
VEGFA-208ENST00000417285 ATG2AQ2TAZ0 1938 aa28.24■■■□□ 2.11
VEGFA-208ENST00000417285 PBX3P40426 434 aa28.23■■■□□ 2.11
VEGFA-208ENST00000417285 BCAR1P56945 870 aa28.23■■■□□ 2.11
VEGFA-208ENST00000417285 HMGN5P82970 282 aaKnown RBP28.23■■■□□ 2.11
VEGFA-208ENST00000417285 POU5F1BQ06416 359 aa28.23■■■□□ 2.11
VEGFA-208ENST00000417285 NCBP1Q09161 790 aaKnown RBP28.23■■■□□ 2.11
VEGFA-208ENST00000417285 NOMO2Q5JPE7 1267 aa28.23■■■□□ 2.11
VEGFA-208ENST00000417285 PLPP4Q5VZY2 271 aa28.23■■■□□ 2.11
VEGFA-208ENST00000417285 MRPL10Q7Z7H8 261 aaKnown RBP28.23■■■□□ 2.11
VEGFA-208ENST00000417285 MRPL43Q8N983 215 aaKnown RBP28.23■■■□□ 2.11
VEGFA-208ENST00000417285 RNF149Q8NC42 400 aa28.23■■■□□ 2.11
VEGFA-208ENST00000417285 C8orf76Q96K31 380 aa28.23■■■□□ 2.11
VEGFA-208ENST00000417285 KIF2CQ99661 725 aa28.23■■■□□ 2.11
VEGFA-208ENST00000417285 C11orf16Q9NQ32 467 aa28.23■■■□□ 2.11
VEGFA-208ENST00000417285 ARIH1Q9Y4X5 557 aaPredicted RBP28.23■■■□□ 2.11
VEGFA-208ENST00000417285 OFD1O75665 1012 aa28.22■■■□□ 2.11
VEGFA-208ENST00000417285 TFDP1Q14186 410 aa28.22■■■□□ 2.11
VEGFA-208ENST00000417285 SMC1AQ14683 1233 aaKnown RBP28.22■■■□□ 2.11
VEGFA-208ENST00000417285 LPPQ93052 612 aa28.22■■■□□ 2.11
VEGFA-208ENST00000417285 TMEM169Q96HH4 297 aa28.22■■■□□ 2.11
VEGFA-208ENST00000417285 C5orf42Q9H799 3197 aa28.21■■■□□ 2.11
VEGFA-208ENST00000417285 PRR33A8MZF0 331 aa28.21■■■□□ 2.11
VEGFA-208ENST00000417285 DGAT1O75907 488 aa28.21■■■□□ 2.11
VEGFA-208ENST00000417285 HOXA11P31270 313 aaPredicted RBP28.21■■■□□ 2.11
VEGFA-208ENST00000417285 RBM25P49756 843 aaKnown RBP28.21■■■□□ 2.11
VEGFA-208ENST00000417285 GUCY1B3Q02153 619 aa28.21■■■□□ 2.11
VEGFA-208ENST00000417285 RNASELQ05823 741 aaKnown RBP28.21■■■□□ 2.11
VEGFA-208ENST00000417285 CNNM3Q8NE01 707 aa28.21■■■□□ 2.11
VEGFA-208ENST00000417285 MINDY3Q9H8M7 445 aa28.21■■■□□ 2.11
VEGFA-208ENST00000417285 KANSL3Q9P2N6 904 aa28.21■■■□□ 2.11
VEGFA-208ENST00000417285 PLXNA4Q9HCM2 1894 aa28.21■■■□□ 2.11
VEGFA-208ENST00000417285 HIDE1A8MVS5 230 aa28.2■■■□□ 2.1
VEGFA-208ENST00000417285 HOXB8P17481 243 aaPredicted RBP28.2■■■□□ 2.1
VEGFA-208ENST00000417285 AXLP30530 894 aa28.2■■■□□ 2.1
VEGFA-208ENST00000417285 KCNC3Q14003 757 aa28.2■■■□□ 2.1
VEGFA-208ENST00000417285 URGCPQ8TCY9 931 aa28.2■■■□□ 2.1
VEGFA-208ENST00000417285 CCDC43Q96MW1 224 aaKnown RBP28.2■■■□□ 2.1
VEGFA-208ENST00000417285 UBN1Q9NPG3 1134 aa28.2■■■□□ 2.1
VEGFA-208ENST00000417285 BMP2KQ9NSY1 1161 aaPredicted RBP28.2■■■□□ 2.1
VEGFA-208ENST00000417285 TBC1D13Q9NVG8 400 aa28.2■■■□□ 2.1
VEGFA-208ENST00000417285 RAPGEFL1Q9UHV5 662 aa28.2■■■□□ 2.1
VEGFA-208ENST00000417285 HCN4Q9Y3Q4 1203 aa28.2■■■□□ 2.1
VEGFA-208ENST00000417285 USP15Q9Y4E8 981 aaPredicted RBP28.2■■■□□ 2.1
VEGFA-208ENST00000417285 CNTNAP2Q9UHC6 1331 aa28.19■■■□□ 2.1
VEGFA-208ENST00000417285 ZC3H11AO75152 810 aaKnown RBP eCLIP28.19■■■□□ 2.1
VEGFA-208ENST00000417285 PTENP60484 403 aa28.19■■■□□ 2.1
VEGFA-208ENST00000417285 ORC2Q13416 577 aaPredicted RBP28.19■■■□□ 2.1
VEGFA-208ENST00000417285 LONRF3Q496Y0 759 aa28.19■■■□□ 2.1
VEGFA-208ENST00000417285 FAM184AQ8NB25 1140 aa28.19■■■□□ 2.1
VEGFA-208ENST00000417285 VN1R2Q8NFZ6 395 aa28.19■■■□□ 2.1
VEGFA-208ENST00000417285 FOXP1Q9H334 677 aaPredicted RBP28.19■■■□□ 2.1
VEGFA-208ENST00000417285 XPNPEP1Q9NQW7 623 aa28.19■■■□□ 2.1
VEGFA-208ENST00000417285 STK39Q9UEW8 545 aa28.19■■■□□ 2.1
VEGFA-208ENST00000417285 FAM86C2PA6NEL3 165 aa28.18■■■□□ 2.1
VEGFA-208ENST00000417285 C2orf71A6NGG8 1288 aa28.18■■■□□ 2.1
VEGFA-208ENST00000417285 NT5C1B-RDH14C9J2C7 533 aa28.18■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms