RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 JPH2Q9BR39 696 aaPredicted RBP16.61■□□□□ 0.25
RPS28-201ENST00000417088 ZBP1Q9H171 429 aa16.61■□□□□ 0.25
RPS28-201ENST00000417088 NRDE2Q9H7Z3 1164 aa16.61■□□□□ 0.25
RPS28-201ENST00000417088 IFT122Q9HBG6 1241 aa16.61■□□□□ 0.25
RPS28-201ENST00000417088 FAM105AQ9NUU6 356 aa16.61■□□□□ 0.25
RPS28-201ENST00000417088 WRAP73Q9P2S5 460 aaPredicted RBP16.61■□□□□ 0.25
RPS28-201ENST00000417088 CCDC194A0A1B0GVG4 234 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 DTNBO60941 627 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 OFD1O75665 1012 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 GCFC2P16383 781 aaKnown RBP16.6■□□□□ 0.25
RPS28-201ENST00000417088 SP100P23497 879 aaPredicted RBP16.6■□□□□ 0.25
RPS28-201ENST00000417088 RAB27AP51159 221 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 NOMO2Q5JPE7 1267 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 GLB1LQ6UWU2 654 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 NEK8Q86SG6 692 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 FBXL6Q8N531 539 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 PRSS33Q8NF86 280 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 BCL7CQ8WUZ0 217 aaPredicted RBP16.6■□□□□ 0.25
RPS28-201ENST00000417088 AUTS2Q8WXX7 1259 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 HAS1Q92839 578 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 IGSF21Q96ID5 467 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 ADAM7Q9H2U9 754 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 GJB4Q9NTQ9 266 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 TBC1D13Q9NVG8 400 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 INPP5FQ9Y2H2 1132 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 COL4A3BPQ9Y5P4 624 aa16.6■□□□□ 0.25
RPS28-201ENST00000417088 DKC1O60832 514 aaKnown RBP eCLIP16.59■□□□□ 0.25
RPS28-201ENST00000417088 CDKL5O76039 1030 aa16.59■□□□□ 0.25
RPS28-201ENST00000417088 P4HBP07237 508 aaKnown RBP16.59■□□□□ 0.25
RPS28-201ENST00000417088 GALTP07902 379 aa16.59■□□□□ 0.25
RPS28-201ENST00000417088 CA8P35219 290 aa16.59■□□□□ 0.25
RPS28-201ENST00000417088 ITIH3Q06033 890 aa16.59■□□□□ 0.25
RPS28-201ENST00000417088 BMS1Q14692 1282 aaKnown RBP16.59■□□□□ 0.25
RPS28-201ENST00000417088 CES5AQ6NT32 575 aa16.59■□□□□ 0.25
RPS28-201ENST00000417088 DDX53Q86TM3 631 aaKnown RBP16.59■□□□□ 0.25
RPS28-201ENST00000417088 SUGP1Q8IWZ8 645 aaKnown RBP16.59■□□□□ 0.25
RPS28-201ENST00000417088 OXER1Q8TDS5 423 aa16.59■□□□□ 0.25
RPS28-201ENST00000417088 SLC7A3Q8WY07 619 aa16.59■□□□□ 0.25
RPS28-201ENST00000417088 TMEM143Q96AN5 459 aa16.59■□□□□ 0.25
RPS28-201ENST00000417088 CEP170P1Q96L14 293 aa16.59■□□□□ 0.25
RPS28-201ENST00000417088 SLKQ9H2G2 1235 aaPredicted RBP16.59■□□□□ 0.25
RPS28-201ENST00000417088 POMKQ9H5K3 350 aa16.59■□□□□ 0.25
RPS28-201ENST00000417088 DHX33Q9H6R0 707 aaKnown RBP16.59■□□□□ 0.25
RPS28-201ENST00000417088 AGPAT5Q9NUQ2 364 aa16.59■□□□□ 0.25
RPS28-201ENST00000417088 DNAJB4Q9UDY4 337 aa16.59■□□□□ 0.25
RPS28-201ENST00000417088 IRAK3Q9Y616 596 aa16.59■□□□□ 0.25
RPS28-201ENST00000417088 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.58■□□□□ 0.24
RPS28-201ENST00000417088 CARNS1A5YM72 827 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 TBX3O15119 743 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 B4GALT3O60512 393 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 CCNT1O60563 726 aaKnown RBP16.58■□□□□ 0.24
RPS28-201ENST00000417088 CTSAP10619 480 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 RFC5P40937 340 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 SLC11A1P49279 550 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 POLGP54098 1239 aaPredicted RBP16.58■□□□□ 0.24
RPS28-201ENST00000417088 RNASELQ05823 741 aaKnown RBP16.58■□□□□ 0.24
RPS28-201ENST00000417088 EPHA7Q15375 998 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 AGMOQ6ZNB7 445 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 PIK3AP1Q6ZUJ8 805 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 SRGAP1Q7Z6B7 1085 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 ZNF280BQ86YH2 543 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 C4orf19Q8IY42 314 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 PRPF31Q8WWY3 499 aaKnown RBP16.58■□□□□ 0.24
RPS28-201ENST00000417088 PGBD4Q96DM1 585 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 NECTIN4Q96NY8 510 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 GBP3Q9H0R5 595 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 MINDY3Q9H8M7 445 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 TSHZ2Q9NRE2 1034 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 RGL1Q9NZL6 768 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 TPCN1Q9ULQ1 816 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 NR2E1Q9Y466 385 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 PPME1Q9Y570 386 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 PCDHB2Q9Y5E7 798 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 STK36Q9NRP7 1315 aa16.58■□□□□ 0.24
RPS28-201ENST00000417088 C2CD4DB7Z1M9 353 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 PFKFB2O60825 505 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 CTDNEP1O95476 244 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 WEE2P0C1S8 567 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 SRGAP2CP0DJJ0 459 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 EPCAMP16422 314 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 XBP1P17861 261 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 HOXA11P31270 313 aaPredicted RBP16.57■□□□□ 0.24
RPS28-201ENST00000417088 LAMTOR4Q0VGL1 99 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 EARS2Q5JPH6 523 aaKnown RBP16.57■□□□□ 0.24
RPS28-201ENST00000417088 UBXN11Q5T124 520 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 KANK3Q6NY19 840 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 MRPL10Q7Z7H8 261 aaKnown RBP16.57■□□□□ 0.24
RPS28-201ENST00000417088 ZBTB33Q86T24 672 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 EXOC8Q8IYI6 725 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 C12orf76Q8N812 135 aaPredicted RBP16.57■□□□□ 0.24
RPS28-201ENST00000417088 SLC22A17Q8WUG5 538 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 PSPC1Q8WXF1 523 aaKnown RBP16.57■□□□□ 0.24
RPS28-201ENST00000417088 LXNQ9BS40 222 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 VN1R3Q9BXE9 311 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 BMP2KQ9NSY1 1161 aaPredicted RBP16.57■□□□□ 0.24
RPS28-201ENST00000417088 CACNA1HO95180 2353 aa16.57■□□□□ 0.24
RPS28-201ENST00000417088 DDHD2O94830 711 aa16.56■□□□□ 0.24
RPS28-201ENST00000417088 YWHABP31946 246 aaKnown RBP16.56■□□□□ 0.24
RPS28-201ENST00000417088 MTHFRP42898 656 aa16.56■□□□□ 0.24
RPS28-201ENST00000417088 AFF1P51825 1210 aaKnown RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms