RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CCDC174Q6PII3 467 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 SFR1Q86XK3 245 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 TDHQ8IZJ6 230 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 SLC5A5Q92911 643 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 PNKPQ96T60 521 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 REEP2Q9BRK0 252 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 FGFBP2Q9BYJ0 223 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 ZMYND15Q9H091 742 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 OLFML3Q9NRN5 406 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 KCND2Q9NZV8 630 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 TBC1D7Q9P0N9 293 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 FBXO40Q9UH90 709 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 SASH3O75995 380 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 NOL4O94818 638 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 FDX1P10109 184 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 TCP1P17987 556 aaKnown RBP16.18■□□□□ 0.18
USP4-203ENST00000415188 NR2F2P24468 414 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 CNTN2Q02246 1040 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 SNX17Q15036 470 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 HGSNATQ68CP4 663 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 CCDC70Q6NSX1 233 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 WDR11Q9BZH6 1224 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 ACBD3Q9H3P7 528 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 ACAD9Q9H845 621 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 RNF146Q9NTX7 359 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.18■□□□□ 0.18
USP4-203ENST00000415188 AIPL1Q9NZN9 384 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 SEL1LQ9UBV2 794 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 PHF24Q9UPV7 400 aa16.18■□□□□ 0.18
USP4-203ENST00000415188 ADAMTS4O75173 837 aa16.17■□□□□ 0.18
USP4-203ENST00000415188 PSMD10O75832 226 aa16.17■□□□□ 0.18
USP4-203ENST00000415188 PLEKP08567 350 aaPredicted RBP16.17■□□□□ 0.18
USP4-203ENST00000415188 PSMC6P62333 389 aa16.17■□□□□ 0.18
USP4-203ENST00000415188 IRX5P78411 483 aaPredicted RBP16.17■□□□□ 0.18
USP4-203ENST00000415188 SMC1AQ14683 1233 aaKnown RBP16.17■□□□□ 0.18
USP4-203ENST00000415188 C10orf76Q5T2E6 689 aa16.17■□□□□ 0.18
USP4-203ENST00000415188 ZNF467Q7Z7K2 595 aaPredicted RBP16.17■□□□□ 0.18
USP4-203ENST00000415188 RNF180Q86T96 592 aa16.17■□□□□ 0.18
USP4-203ENST00000415188 NOA1Q8NC60 698 aaKnown RBP16.17■□□□□ 0.18
USP4-203ENST00000415188 CAGE1Q8TC20 777 aa16.17■□□□□ 0.18
USP4-203ENST00000415188 NEK9Q8TD19 979 aa16.17■□□□□ 0.18
USP4-203ENST00000415188 GANQ9H2C0 597 aa16.17■□□□□ 0.18
USP4-203ENST00000415188 ZHX3Q9H4I2 956 aa16.17■□□□□ 0.18
USP4-203ENST00000415188 PRDM5Q9NQX1 630 aaPredicted RBP16.17■□□□□ 0.18
USP4-203ENST00000415188 ARMCX3Q9UH62 379 aaPredicted RBP16.17■□□□□ 0.18
USP4-203ENST00000415188 FBXL5Q9UKA1 691 aa16.17■□□□□ 0.18
USP4-203ENST00000415188 SNX12Q9UMY4 172 aa16.17■□□□□ 0.18
USP4-203ENST00000415188 L1RE1Q9UN81 338 aa16.17■□□□□ 0.18
USP4-203ENST00000415188 HYOU1Q9Y4L1 999 aa16.17■□□□□ 0.18
USP4-203ENST00000415188 BZW2Q9Y6E2 419 aaKnown RBP16.17■□□□□ 0.18
USP4-203ENST00000415188 MACROD2A1Z1Q3 448 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 ENC1O14682 589 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 ADCY6O43306 1168 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 AFPP02771 609 aaKnown RBP16.16■□□□□ 0.18
USP4-203ENST00000415188 RHOXF2BP0C7M4 288 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 ALAS1P13196 640 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 HOXA13P31271 388 aaPredicted RBP16.16■□□□□ 0.18
USP4-203ENST00000415188 CACNB1Q02641 598 aaPredicted RBP16.16■□□□□ 0.18
USP4-203ENST00000415188 ACVR2BQ13705 512 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 TDRD12Q587J7 1177 aaKnown RBP16.16■□□□□ 0.18
USP4-203ENST00000415188 LRCH2Q5VUJ6 765 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 STXBP4Q6ZWJ1 553 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 ARMCX2Q7L311 632 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 SAMD3Q8N6K7 520 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 NOX5Q96PH1 765 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 TRERF1Q96PN7 1200 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 HSD17B14Q9BPX1 270 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 LBHD1Q9BQE6 289 aaPredicted RBP16.16■□□□□ 0.18
USP4-203ENST00000415188 RHOXF2Q9BQY4 288 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 A1CFQ9NQ94 594 aaKnown RBP16.16■□□□□ 0.18
USP4-203ENST00000415188 HDAC6Q9UBN7 1215 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 PRKAG2Q9UGJ0 569 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 DAAM1Q9Y4D1 1078 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 A0A1W2PQ45 241 aaPredicted RBP16.16■□□□□ 0.18
USP4-203ENST00000415188 A0A1W2PQY0 241 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 GTPBP10A4D1E9 387 aaKnown RBP16.16■□□□□ 0.18
USP4-203ENST00000415188 MYADML2A6NDP7 307 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 EPB41P11171 864 aaKnown RBP16.16■□□□□ 0.18
USP4-203ENST00000415188 POLR2FP61218 127 aaKnown RBP16.16■□□□□ 0.18
USP4-203ENST00000415188 VSNL1P62760 191 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 KCNH2Q12809 1159 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 ASIC2Q16515 512 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 LRIT3Q3SXY7 679 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 MUM1L1Q5H9M0 696 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 MMGT1Q8N4V1 131 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 FAM133AQ8N9E0 248 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 MMS19Q96T76 1030 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 BHMT2Q9H2M3 363 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 VIPAS39Q9H9C1 493 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 PDLIM7Q9NR12 457 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 RNF14Q9UBS8 474 aa16.16■□□□□ 0.18
USP4-203ENST00000415188 FRMPD4Q14CM0 1322 aa16.15■□□□□ 0.18
USP4-203ENST00000415188 MCM3APO60318 1980 aa16.15■□□□□ 0.18
USP4-203ENST00000415188 MYH10P35580 1976 aa16.15■□□□□ 0.18
USP4-203ENST00000415188 TRIM43BA6NCK2 446 aa16.15■□□□□ 0.18
USP4-203ENST00000415188 SOWAHBA6NEL2 793 aa16.15■□□□□ 0.18
USP4-203ENST00000415188 BTNL10A8MVZ5 291 aa16.15■□□□□ 0.18
USP4-203ENST00000415188 MEIS1O00470 390 aa16.15■□□□□ 0.18
USP4-203ENST00000415188 FAM13AO94988 1023 aa16.15■□□□□ 0.18
USP4-203ENST00000415188 CFBP00751 764 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms