RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 DENND3A2RUS2 1198 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 LRRIQ4A6NIV6 560 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 SMTNL1A8MU46 457 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 PDXKO00764 312 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 SRGAP2CP0DJJ0 459 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 COL6A1P12109 1028 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 SNRPFP62306 86 aaKnown RBP15.68■□□□□ 0.1
SF3B1-204ENST00000414963 MYL5Q02045 173 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 LRRC63Q05C16 580 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 NCAPHQ15003 741 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 FAM47CQ5HY64 1035 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 SPATA1Q5VX52 437 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 TTI2Q6NXR4 508 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 MAP4K3Q8IVH8 894 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 KSR1Q8IVT5 923 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 RNF149Q8NC42 400 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 ACCSQ96QU6 501 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 KIFC3Q9BVG8 833 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 IFT122Q9HBG6 1241 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 TRAF3IP3Q9Y228 551 aa15.68■□□□□ 0.1
SF3B1-204ENST00000414963 CENPFP49454 3210 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 K7ERI5 159 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 TGFB1I1O43294 461 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 GPR32O75388 356 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 VTNP04004 478 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 PHKA2P46019 1235 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 GPC3P51654 580 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 PMS1P54277 932 aaKnown RBP15.67■□□□□ 0.1
SF3B1-204ENST00000414963 KCNA1Q09470 495 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 PTK7Q13308 1070 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 GSE1Q14687 1217 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 PTGISQ16647 500 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 NFIL3Q16649 462 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 ANKRD40Q6AI12 368 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 PPP4R3CPQ6ZMV5 832 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 TAS1R3Q7RTX0 852 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 ZBTB8OSQ8IWT0 167 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 GOLGA5Q8TBA6 731 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 DNAJB3Q8WWF6 145 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 TMEM106CQ9BVX2 250 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 CCDC113Q9H0I3 377 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 FZD8Q9H461 694 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 CGNQ9P2M7 1197 aaKnown RBP15.67■□□□□ 0.1
SF3B1-204ENST00000414963 EXOC7Q9UPT5 735 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 CTNND2Q9UQB3 1225 aa15.67■□□□□ 0.1
SF3B1-204ENST00000414963 ZMYM2Q9UBW7 1377 aa15.66■□□□□ 0.1
SF3B1-204ENST00000414963 CAND2O75155 1236 aa15.66■□□□□ 0.1
SF3B1-204ENST00000414963 PIGRP01833 764 aa15.66■□□□□ 0.1
SF3B1-204ENST00000414963 NLRP11P59045 1033 aaKnown RBP15.66■□□□□ 0.1
SF3B1-204ENST00000414963 FAM187BQ17R55 369 aa15.66■□□□□ 0.1
SF3B1-204ENST00000414963 EDRF1Q3B7T1 1238 aa15.66■□□□□ 0.1
SF3B1-204ENST00000414963 C1orf53Q5VUE5 145 aa15.66■□□□□ 0.1
SF3B1-204ENST00000414963 SRGAP1Q7Z6B7 1085 aa15.66■□□□□ 0.1
SF3B1-204ENST00000414963 RSPH3Q86UC2 560 aa15.66■□□□□ 0.1
SF3B1-204ENST00000414963 LUZP1Q86V48 1076 aa15.66■□□□□ 0.1
SF3B1-204ENST00000414963 NELFCDQ8IXH7 590 aa15.66■□□□□ 0.1
SF3B1-204ENST00000414963 ZC3H3Q8IXZ2 948 aaKnown RBP15.66■□□□□ 0.1
SF3B1-204ENST00000414963 AOPEPQ8N6M6 819 aa15.66■□□□□ 0.1
SF3B1-204ENST00000414963 NLRP4Q96MN2 994 aa15.66■□□□□ 0.1
SF3B1-204ENST00000414963 DUSP9Q99956 384 aaKnown RBP15.66■□□□□ 0.1
SF3B1-204ENST00000414963 FAM49AQ9H0Q0 323 aaPredicted RBP15.66■□□□□ 0.1
SF3B1-204ENST00000414963 GBP3Q9H0R5 595 aa15.66■□□□□ 0.1
SF3B1-204ENST00000414963 TYW1Q9NV66 732 aaKnown RBP15.66■□□□□ 0.1
SF3B1-204ENST00000414963 KAT6AQ92794 2004 aa15.65■□□□□ 0.1
SF3B1-204ENST00000414963 A0A087WZ62 844 aa15.65■□□□□ 0.1
SF3B1-204ENST00000414963 BECN2A8MW95 431 aa15.65■□□□□ 0.1
SF3B1-204ENST00000414963 CRYBB1P53674 252 aaPredicted RBP15.65■□□□□ 0.1
SF3B1-204ENST00000414963 STX17P56962 302 aa15.65■□□□□ 0.1
SF3B1-204ENST00000414963 MBTD1Q05BQ5 628 aa15.65■□□□□ 0.1
SF3B1-204ENST00000414963 STRN3Q13033 797 aa15.65■□□□□ 0.1
SF3B1-204ENST00000414963 MYBPC2Q14324 1141 aa15.65■□□□□ 0.1
SF3B1-204ENST00000414963 SNX17Q15036 470 aa15.65■□□□□ 0.1
SF3B1-204ENST00000414963 PCBP1Q15365 356 aaKnown RBP eCLIP15.65■□□□□ 0.1
SF3B1-204ENST00000414963 TRIM71Q2Q1W2 868 aaKnown RBP15.65■□□□□ 0.1
SF3B1-204ENST00000414963 UVSSAQ2YD98 709 aa15.65■□□□□ 0.1
SF3B1-204ENST00000414963 C12orf56Q8IXR9 622 aa15.65■□□□□ 0.1
SF3B1-204ENST00000414963 RNF214Q8ND24 703 aa15.65■□□□□ 0.1
SF3B1-204ENST00000414963 NOC3LQ8WTT2 800 aaKnown RBP15.65■□□□□ 0.1
SF3B1-204ENST00000414963 TSG101Q99816 390 aa15.65■□□□□ 0.1
SF3B1-204ENST00000414963 FDXACB1Q9BRP7 624 aaPredicted RBP15.65■□□□□ 0.1
SF3B1-204ENST00000414963 GCOM2Q9BZD3 368 aaPredicted RBP15.65■□□□□ 0.1
SF3B1-204ENST00000414963 TRMT13Q9NUP7 481 aaKnown RBP15.65■□□□□ 0.1
SF3B1-204ENST00000414963 MYH11P35749 1972 aa15.64■□□□□ 0.09
SF3B1-204ENST00000414963 GOLGA6L3A6NEY3 463 aa15.64■□□□□ 0.09
SF3B1-204ENST00000414963 ACKR2O00590 384 aa15.64■□□□□ 0.09
SF3B1-204ENST00000414963 CALUO43852 315 aaPredicted RBP15.64■□□□□ 0.09
SF3B1-204ENST00000414963 B4GALT4O60513 344 aa15.64■□□□□ 0.09
SF3B1-204ENST00000414963 CD4P01730 458 aa15.64■□□□□ 0.09
SF3B1-204ENST00000414963 MRPS6P82932 125 aaKnown RBP15.64■□□□□ 0.09
SF3B1-204ENST00000414963 FKBP3Q00688 224 aaKnown RBP15.64■□□□□ 0.09
SF3B1-204ENST00000414963 RBL2Q08999 1139 aa15.64■□□□□ 0.09
SF3B1-204ENST00000414963 MAPK6Q16659 721 aa15.64■□□□□ 0.09
SF3B1-204ENST00000414963 KIZQ2M2Z5 673 aa15.64■□□□□ 0.09
SF3B1-204ENST00000414963 FAM26DQ5JW98 314 aa15.64■□□□□ 0.09
SF3B1-204ENST00000414963 ZPBP2Q6X784 338 aa15.64■□□□□ 0.09
SF3B1-204ENST00000414963 SLC39A5Q6ZMH5 540 aa15.64■□□□□ 0.09
SF3B1-204ENST00000414963 HS2ST1Q7LGA3 356 aa15.64■□□□□ 0.09
SF3B1-204ENST00000414963 ANKRD33Q7Z3H0 272 aa15.64■□□□□ 0.09
SF3B1-204ENST00000414963 SLC9A9Q8IVB4 645 aa15.64■□□□□ 0.09
SF3B1-204ENST00000414963 SYCP3Q8IZU3 236 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms