RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ST6GALNAC4Q9H4F1 302 aa19.88■□□□□ 0.77
SDC1-203ENST00000403076 ARHGAP28Q9P2N2 729 aa19.88■□□□□ 0.77
SDC1-203ENST00000403076 CTNND2Q9UQB3 1225 aa19.88■□□□□ 0.77
SDC1-203ENST00000403076 ADGRA3Q8IWK6 1321 aa19.88■□□□□ 0.77
SDC1-203ENST00000403076 DCDC2CA8MYV0 355 aa19.87■□□□□ 0.77
SDC1-203ENST00000403076 EN2P19622 333 aaPredicted RBP19.87■□□□□ 0.77
SDC1-203ENST00000403076 SCP2P22307 547 aa19.87■□□□□ 0.77
SDC1-203ENST00000403076 PTENP60484 403 aa19.87■□□□□ 0.77
SDC1-203ENST00000403076 MRPS6P82932 125 aaKnown RBP19.87■□□□□ 0.77
SDC1-203ENST00000403076 GTF2BQ00403 316 aa19.87■□□□□ 0.77
SDC1-203ENST00000403076 POU5F1BQ06416 359 aa19.87■□□□□ 0.77
SDC1-203ENST00000403076 COBLL1Q53SF7 1204 aa19.87■□□□□ 0.77
SDC1-203ENST00000403076 ZNF710Q8N1W2 664 aa19.87■□□□□ 0.77
SDC1-203ENST00000403076 ZNF507Q8TCN5 953 aa19.87■□□□□ 0.77
SDC1-203ENST00000403076 DHTKD1Q96HY7 919 aaPredicted RBP19.87■□□□□ 0.77
SDC1-203ENST00000403076 CTAGE1Q96RT6 745 aa19.87■□□□□ 0.77
SDC1-203ENST00000403076 GCOM2Q9BZD3 368 aaPredicted RBP19.87■□□□□ 0.77
SDC1-203ENST00000403076 INO80B-WBP1J3KQ70 363 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 CTSHP09668 335 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 ZNF165P49910 485 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 STX17P56962 302 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 PAK1Q13153 545 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 CT47A1Q5JQC4 288 aaPredicted RBP19.86■□□□□ 0.77
SDC1-203ENST00000403076 FAM126BQ8IXS8 530 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 NELFBQ8WX92 580 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 WNT8BQ93098 351 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 HVCN1Q96D96 273 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 INO80BQ9C086 356 aaPredicted RBP19.86■□□□□ 0.77
SDC1-203ENST00000403076 ADAMTS10Q9H324 1103 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 TMEM134Q9H6X4 195 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 TBX20Q9UMR3 447 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 EXOC7Q9UPT5 735 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 ATP11BQ9Y2G3 1177 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 UBE4BO95155 1302 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 GPR32O75388 356 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 PPP1R37O75864 691 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 CAVIN2O95810 425 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 KCNA1Q09470 495 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 KNOP1Q1ED39 458 aaKnown RBP19.86■□□□□ 0.77
SDC1-203ENST00000403076 BMT2Q1RMZ1 405 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 COL13A1Q5TAT6 717 aaPredicted RBP19.86■□□□□ 0.77
SDC1-203ENST00000403076 CDCA2Q69YH5 1023 aaPredicted RBP19.86■□□□□ 0.77
SDC1-203ENST00000403076 SRGAP1Q7Z6B7 1085 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 RPAINQ86UA6 219 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 BICD1Q96G01 975 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 OSMRQ99650 979 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 TSG101Q99816 390 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 STRA6Q9BX79 667 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 CELF4Q9BZC1 486 aaKnown RBP19.86■□□□□ 0.77
SDC1-203ENST00000403076 TMEM206Q9H813 350 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 IFT122Q9HBG6 1241 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 TRPV2Q9Y5S1 764 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 PHLPP2Q6ZVD8 1323 aa19.86■□□□□ 0.77
SDC1-203ENST00000403076 PRKCBP05771 671 aa19.85■□□□□ 0.77
SDC1-203ENST00000403076 CCNE1P24864 410 aa19.85■□□□□ 0.77
SDC1-203ENST00000403076 ERCC5P28715 1186 aaPredicted RBP19.85■□□□□ 0.77
SDC1-203ENST00000403076 CRYBB1P53674 252 aaPredicted RBP19.85■□□□□ 0.77
SDC1-203ENST00000403076 MAPK6Q16659 721 aa19.85■□□□□ 0.77
SDC1-203ENST00000403076 TMEM132AQ24JP5 1023 aa19.85■□□□□ 0.77
SDC1-203ENST00000403076 TRIM60Q495X7 471 aa19.85■□□□□ 0.77
SDC1-203ENST00000403076 CCDC155Q8N6L0 562 aa19.85■□□□□ 0.77
SDC1-203ENST00000403076 DHX38Q92620 1227 aaKnown RBP19.85■□□□□ 0.77
SDC1-203ENST00000403076 P2RX5Q93086 422 aa19.85■□□□□ 0.77
SDC1-203ENST00000403076 NFKBIZQ9BYH8 718 aa19.85■□□□□ 0.77
SDC1-203ENST00000403076 CDHR5Q9HBB8 845 aa19.85■□□□□ 0.77
SDC1-203ENST00000403076 CDY2AQ9Y6F7 541 aa19.85■□□□□ 0.77
SDC1-203ENST00000403076 BICDL2A1A5D9 508 aa19.84■□□□□ 0.77
SDC1-203ENST00000403076 CSDE1O75534 798 aaKnown RBP19.84■□□□□ 0.77
SDC1-203ENST00000403076 TLE2Q04725 743 aa19.84■□□□□ 0.77
SDC1-203ENST00000403076 TPD52L1Q16890 204 aaPredicted RBP19.84■□□□□ 0.77
SDC1-203ENST00000403076 C1orf53Q5VUE5 145 aa19.84■□□□□ 0.77
SDC1-203ENST00000403076 ANKRD33Q7Z3H0 272 aa19.84■□□□□ 0.77
SDC1-203ENST00000403076 MAP4K3Q8IVH8 894 aa19.84■□□□□ 0.77
SDC1-203ENST00000403076 GBP3Q9H0R5 595 aa19.84■□□□□ 0.77
SDC1-203ENST00000403076 MINDY3Q9H8M7 445 aa19.84■□□□□ 0.77
SDC1-203ENST00000403076 RWDD2AQ9UIY3 292 aa19.84■□□□□ 0.77
SDC1-203ENST00000403076 BECN2A8MW95 431 aa19.83■□□□□ 0.77
SDC1-203ENST00000403076 CD4P01730 458 aa19.83■□□□□ 0.77
SDC1-203ENST00000403076 EIF4BP23588 611 aaKnown RBP19.83■□□□□ 0.77
SDC1-203ENST00000403076 HOXD13P35453 343 aa19.83■□□□□ 0.77
SDC1-203ENST00000403076 MBTD1Q05BQ5 628 aa19.83■□□□□ 0.77
SDC1-203ENST00000403076 BFSP2Q13515 415 aa19.83■□□□□ 0.77
SDC1-203ENST00000403076 SNX17Q15036 470 aa19.83■□□□□ 0.77
SDC1-203ENST00000403076 CENPPQ6IPU0 288 aa19.83■□□□□ 0.77
SDC1-203ENST00000403076 HS2ST1Q7LGA3 356 aa19.83■□□□□ 0.77
SDC1-203ENST00000403076 TAS1R3Q7RTX0 852 aa19.83■□□□□ 0.77
SDC1-203ENST00000403076 IFNLR1Q8IU57 520 aaPredicted RBP19.83■□□□□ 0.77
SDC1-203ENST00000403076 FAM200AQ8TCP9 573 aa19.83■□□□□ 0.77
SDC1-203ENST00000403076 TOX2Q96NM4 488 aa19.83■□□□□ 0.77
SDC1-203ENST00000403076 SEMA6BQ9H3T3 888 aa19.83■□□□□ 0.77
SDC1-203ENST00000403076 PRMT7Q9NVM4 692 aaPredicted RBP19.83■□□□□ 0.77
SDC1-203ENST00000403076 TRIM49BA6NDI0 452 aa19.82■□□□□ 0.76
SDC1-203ENST00000403076 CAND2O75155 1236 aa19.82■□□□□ 0.76
SDC1-203ENST00000403076 ERLIN2O94905 339 aa19.82■□□□□ 0.76
SDC1-203ENST00000403076 DARSP14868 501 aaKnown RBP19.82■□□□□ 0.76
SDC1-203ENST00000403076 LIG4P49917 911 aa19.82■□□□□ 0.76
SDC1-203ENST00000403076 TRIM71Q2Q1W2 868 aaKnown RBP19.82■□□□□ 0.76
SDC1-203ENST00000403076 ZNF618Q5T7W0 954 aa19.82■□□□□ 0.76
SDC1-203ENST00000403076 CATSPER4Q7RTX7 472 aa19.82■□□□□ 0.76
SDC1-203ENST00000403076 AOPEPQ8N6M6 819 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms