RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 SLC30A1Q9Y6M5 507 aa7.65□□□□□ -1.18
UPF2-203ENST00000397053 COL17A1Q9UMD9 1497 aaPredicted RBP7.65□□□□□ -1.19
UPF2-203ENST00000397053 RNF103-CHMP3A0A140T963 221 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 KDM1AO60341 852 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 EIF4A3P38919 411 aaKnown RBP7.65□□□□□ -1.19
UPF2-203ENST00000397053 LIG3P49916 1009 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 LRRC63Q05C16 580 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 R3HDM1Q15032 1099 aaKnown RBP7.65□□□□□ -1.19
UPF2-203ENST00000397053 PHKG1Q16816 387 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 KCNV1Q6PIU1 500 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 NT5DC4Q86YG4 428 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 SLC35F6Q8N357 371 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 ZNF513Q8N8E2 541 aaPredicted RBP7.65□□□□□ -1.19
UPF2-203ENST00000397053 ASAP3Q8TDY4 903 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 PAWRQ96IZ0 340 aaKnown RBP7.65□□□□□ -1.19
UPF2-203ENST00000397053 TESK2Q96S53 571 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 KATNAL1Q9BW62 490 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 AAASQ9NRG9 546 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 TXLNGQ9NUQ3 528 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 ABCB11O95342 1321 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 C5orf58C9J3I9 102 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 LUC7L3O95232 432 aaKnown RBP7.65□□□□□ -1.19
UPF2-203ENST00000397053 TBXAS1P24557 533 aaPredicted RBP7.65□□□□□ -1.19
UPF2-203ENST00000397053 ACTR2P61160 394 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 ZBED6P86452 979 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 IER5Q5VY09 327 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 TEX9Q8N6V9 391 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 TMEM169Q96HH4 297 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 CCDC90BQ9GZT6 254 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 NDST4Q9H3R1 872 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 ANTXR1Q9H6X2 564 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 SAYSD1Q9NPB0 183 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 PPARGC1AQ9UBK2 798 aaKnown RBP7.65□□□□□ -1.19
UPF2-203ENST00000397053 CDC23Q9UJX2 597 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 FBXL5Q9UKA1 691 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 MTMR6Q9Y217 621 aa7.65□□□□□ -1.19
UPF2-203ENST00000397053 APOBEC2Q9Y235 224 aaKnown RBP7.65□□□□□ -1.19
UPF2-203ENST00000397053 MAP3K13O43283 966 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 PRPF3O43395 683 aaKnown RBP7.64□□□□□ -1.19
UPF2-203ENST00000397053 PPP6R2O75170 966 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 SERPING1P05155 500 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 P4HBP07237 508 aaKnown RBP7.64□□□□□ -1.19
UPF2-203ENST00000397053 ADRA2BP18089 450 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 CXCR5P32302 372 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 EPHB4P54760 987 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 SFSWAPQ12872 951 aaKnown RBP7.64□□□□□ -1.19
UPF2-203ENST00000397053 ZSCAN26Q16670 478 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 FSCBQ5H9T9 825 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 PID1Q7Z2X4 250 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 FMO2Q99518 471 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 HEMGNQ9BXL5 484 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 CD209Q9NNX6 404 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 TMEM161AQ9NX61 479 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 SEL1LQ9UBV2 794 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 DNAJC12Q9UKB3 198 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 PRR23AA6NEV1 266 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 ACSL3O95573 720 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 HMBSP08397 361 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 RALBP11234 206 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 DR1Q01658 176 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 AP1B1Q10567 949 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 SCRN1Q12765 414 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 C16orf72Q14CZ0 275 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 HIF1AQ16665 826 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 FAM102AQ5T9C2 384 aaPredicted RBP7.64□□□□□ -1.19
UPF2-203ENST00000397053 SUSD4Q5VX71 490 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 KRT39Q6A163 491 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 RCSD1Q6JBY9 416 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 RASEFQ8IZ41 740 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 STKLD1Q8NE28 680 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 PIGBQ92521 554 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.64□□□□□ -1.19
UPF2-203ENST00000397053 TSSK1BQ9BXA7 367 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 HACL1Q9UJ83 578 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 ABCC4O15439 1325 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 CYP21A2P08686 494 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 CDC42EP1Q00587 391 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 GRIN1Q05586 938 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 ARHGAP15Q53QZ3 475 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 USP17L6PQ6QN14 398 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 RNF149Q8NC42 400 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 COG1Q8WTW3 980 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 UCMAQ8WVF2 138 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 ZFYVE19Q96K21 471 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 FAM129AQ9BZQ8 928 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 ZSWIM5Q9P217 1185 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 ZNF335Q9H4Z2 1342 aaPredicted RBP7.64□□□□□ -1.19
UPF2-203ENST00000397053 DFFAO00273 331 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 PFDN1O60925 122 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 SRGAP2O75044 1071 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 KRT7P08729 469 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 SKIP12755 728 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 STAT5BP51692 787 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 PSMC5P62195 406 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 IFT88Q13099 833 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 SNAPC2Q13487 334 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 RASGRF1Q13972 1273 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 KRT72Q14CN4 511 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 DUOXA2Q1HG44 320 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 FASTKD1Q53R41 847 aaKnown RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms