RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TTC3P53804 2025 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 TMEM150BA6NC51 233 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 PMM2O15305 246 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 TSPAN1O60635 241 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 NR1I2O75469 434 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 EDN1P05305 212 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 EIF4BP23588 611 aaKnown RBP7.76□□□□□ -1.17
LIMA1-202ENST00000394943 DNM2P50570 870 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 MARSP56192 900 aaKnown RBP7.76□□□□□ -1.17
LIMA1-202ENST00000394943 KLHL40Q2TBA0 621 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 TRAPPC12Q8WVT3 735 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 BPIFA3Q9BQP9 254 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 PARVGQ9HBI0 331 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 TMEM265A0A087WTH1 108 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 CARNS1A5YM72 827 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 C9IYK1 514 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 NCLP19338 710 aaKnown RBP7.75□□□□□ -1.17
LIMA1-202ENST00000394943 POLGP54098 1239 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-202ENST00000394943 COASYQ13057 564 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 MTERF2Q49AM1 385 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 TMEM240Q5SV17 173 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 GPBP1Q86WP2 473 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 HIPK3Q9H422 1215 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 CDHR5Q9HBB8 845 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 SAMM50Q9Y512 469 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 TDRD15B5MCY1 1934 aaKnown RBP7.75□□□□□ -1.17
LIMA1-202ENST00000394943 A0A1B0GVL5 298 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 RSPH10B2B2RC85 870 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 GPR182O15218 404 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 EOMESO95936 686 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 RSPH10BP0C881 870 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 PHKA2P46019 1235 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 RAB27AP51159 221 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 POSTNQ15063 836 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 PSRC1Q6PGN9 363 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-202ENST00000394943 RTN4RL1Q86UN2 441 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-202ENST00000394943 GPR65Q8IYL9 337 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 RPUSD2Q8IZ73 545 aaKnown RBP7.75□□□□□ -1.17
LIMA1-202ENST00000394943 TMEM199Q8N511 208 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 DNAJB3Q8WWF6 145 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 ACO2Q99798 780 aaKnown RBP7.75□□□□□ -1.17
LIMA1-202ENST00000394943 C1RP00736 705 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 SKIP12755 728 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 GARTP22102 1010 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 SLC39A4Q6P5W5 647 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 GUF1Q8N442 669 aaKnown RBP7.75□□□□□ -1.17
LIMA1-202ENST00000394943 KIAA0895Q8NCT3 520 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 CNNM3Q8NE01 707 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 BORCS6Q96GS4 357 aa7.75□□□□□ -1.17
LIMA1-202ENST00000394943 GCOM2Q9BZD3 368 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-202ENST00000394943 MARCH6O60337 910 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 ATP2B1P20020 1258 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 MARK3P27448 753 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 CUL4BQ13620 913 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 NAB2Q15742 525 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 ZNF658Q5TYW1 1059 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-202ENST00000394943 MAP7D2Q96T17 732 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 OSBPL7Q9BZF2 842 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 MINDY3Q9H8M7 445 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 DERAQ9Y315 318 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 NOC2LQ9Y3T9 749 aaKnown RBP7.74□□□□□ -1.17
LIMA1-202ENST00000394943 UMODL1Q5DID0 1318 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-202ENST00000394943 MEFVO15553 781 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-202ENST00000394943 RPN1P04843 607 aaKnown RBP7.74□□□□□ -1.17
LIMA1-202ENST00000394943 MCF2P10911 925 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 ATF7P17544 494 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-202ENST00000394943 BMP6P22004 513 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 PAX3P23760 479 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 CLCN3P51790 818 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 SOX10P56693 466 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 HSP90AA2PQ14568 343 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-202ENST00000394943 DCAF4L1Q3SXM0 396 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 CENPPQ6IPU0 288 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 CCDC65Q8IXS2 484 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 AGO3Q9H9G7 860 aaKnown RBP7.74□□□□□ -1.17
LIMA1-202ENST00000394943 RMND1Q9NWS8 449 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 LARSQ9P2J5 1176 aaKnown RBP7.74□□□□□ -1.17
LIMA1-202ENST00000394943 TBX20Q9UMR3 447 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 PATJQ8NI35 1801 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 N4BP3O15049 544 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 TRAK2O60296 914 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 PRR29P0C7W0 189 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 FPGSQ05932 587 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 EDRF1Q3B7T1 1238 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 LRIT3Q3SXY7 679 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 SPECC1Q5M775 1068 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 LIMS2Q7Z4I7 341 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 CEP57L1Q8IYX8 460 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 FAXDC2Q96IV6 333 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 CDK5RAP3Q96JB5 506 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 HAPLN2Q9GZV7 340 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 PDZD7Q9H5P4 517 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 TMEM206Q9H813 350 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 TMEM39AQ9NV64 488 aa7.74□□□□□ -1.17
LIMA1-202ENST00000394943 A0A0U1RQF3 1178 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 C5orf67F2Z3F1 127 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 SFPQP23246 707 aaKnown RBP eCLIP7.73□□□□□ -1.17
LIMA1-202ENST00000394943 ZBTB6Q15916 424 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 SKOR2Q2VWA4 1001 aaPredicted RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms