RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 A0A0U1RQG5 324 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-203ENST00000394269 TNFAIP3P21580 790 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 MUTP22033 750 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 IREB2P48200 963 aaKnown RBP12.1□□□□□ -0.47
TCOF1-203ENST00000394269 MAPK8IP2Q13387 824 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-203ENST00000394269 LY6KQ17RY6 165 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 SEZ6Q53EL9 994 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 SMAP1Q8IYB5 467 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-203ENST00000394269 KCTD17Q8N5Z5 321 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 GLG1Q92896 1179 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 PLCB1Q9NQ66 1216 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 MYH10P35580 1976 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 ZNF646O15015 1829 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-203ENST00000394269 RBAK-RBAKDNI3L0D1 243 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 KCNK3O14649 394 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 GYS2P54840 703 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 SNRNP35Q16560 246 aaKnown RBP12.09□□□□□ -0.47
TCOF1-203ENST00000394269 DPY19L2Q6NUT2 758 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 BORCS6Q96GS4 357 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 IFT74Q96LB3 600 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 PI4K2AQ9BTU6 479 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 POLR3FQ9H1D9 316 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-203ENST00000394269 ANKFY1Q9P2R3 1169 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 SOCS7O14512 581 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 ERLIN1O75477 346 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 CALCAP01258 141 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 NF2P35240 595 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 CKAP4Q07065 602 aaKnown RBP12.09□□□□□ -0.47
TCOF1-203ENST00000394269 PRPF4BQ13523 1007 aaKnown RBP12.09□□□□□ -0.47
TCOF1-203ENST00000394269 MIS18BP1Q6P0N0 1132 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 INTS8Q75QN2 995 aaKnown RBP12.09□□□□□ -0.47
TCOF1-203ENST00000394269 TXLNBQ8N3L3 684 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 HDAC7Q8WUI4 952 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 SYN2Q92777 582 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-203ENST00000394269 FAM212AQ96EL1 285 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 TCHPQ9BT92 498 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 TLR10Q9BXR5 811 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 BRCA2P51587 3418 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 TMEM110-MUSTN1A8MSY1 372 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 TBC1D8O95759 1140 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 H2AFZP0C0S5 128 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 SOX5P35711 763 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 ACOT2P49753 483 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 MXI1P50539 228 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 H2AFVQ71UI9 128 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 TRIM50Q86XT4 487 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 TMEM161BQ8NDZ6 487 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 TAF4BQ92750 862 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 ZNF302Q9NR11 478 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 CYP26B1Q9NR63 512 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 DMAC2Q9NW81 257 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 APEX2Q9UBZ4 518 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 PNMA2Q9UL42 364 aa12.09□□□□□ -0.47
TCOF1-203ENST00000394269 F8VZ95 297 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 DDX3XO00571 662 aaKnown RBP eCLIP12.08□□□□□ -0.489e-17■■□□□ 11.8
TCOF1-203ENST00000394269 MYCP01106 439 aaPredicted RBP12.08□□□□□ -0.48
TCOF1-203ENST00000394269 ADRB2P07550 413 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 ADSSP30520 456 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 LLGL1Q15334 1064 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 NAB2Q15742 525 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 ADAT2Q7Z6V5 191 aaKnown RBP12.08□□□□□ -0.48
TCOF1-203ENST00000394269 DAAM2Q86T65 1068 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 CREG2Q8IUH2 290 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 ARHGEF19Q8IW93 802 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 TEX2Q8IWB9 1127 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 PLEKHO2Q8TD55 490 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 CCDC102AQ96A19 550 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 LRRC1Q9BTT6 524 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 SPATC1LQ9H0A9 340 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 PPP1R37O75864 691 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 YBX3P16989 372 aaKnown RBP eCLIP12.08□□□□□ -0.489e-6■□□□□ 10.4
TCOF1-203ENST00000394269 Q3C1V9 767 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 CCDC70Q6NSX1 233 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 PHLDB2Q86SQ0 1253 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 PALB2Q86YC2 1186 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 KLHL7Q8IXQ5 586 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 SLC20A1Q8WUM9 679 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 CDHR1Q96JP9 859 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 PPP1R16BQ96T49 567 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 MKNK1Q9BUB5 465 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 STK33Q9BYT3 514 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 ASCC2Q9H1I8 757 aaPredicted RBP12.08□□□□□ -0.48
TCOF1-203ENST00000394269 OSGEPQ9NPF4 335 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 ANKEF1Q9NU02 776 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 TAS2R14Q9NYV8 317 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 EXOC7Q9UPT5 735 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 ANO9A1A5B4 782 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 CCDC151A5D8V7 595 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 EIF3JO75822 258 aaKnown RBP12.08□□□□□ -0.48
TCOF1-203ENST00000394269 SRGAP2CP0DJJ0 459 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 TNNI1P19237 187 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 LIG4P49917 911 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 SPATA4Q8NEY3 305 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 ZBTB10Q96DT7 871 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 C12orf42Q96LP6 360 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 BZW2Q9Y6E2 419 aaKnown RBP12.08□□□□□ -0.48
TCOF1-203ENST00000394269 ADGRA3Q8IWK6 1321 aa12.08□□□□□ -0.48
TCOF1-203ENST00000394269 NOP56O00567 594 aaKnown RBP12.07□□□□□ -0.48
TCOF1-203ENST00000394269 MAFGO15525 162 aa12.07□□□□□ -0.48
TCOF1-203ENST00000394269 CEP104O60308 925 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms