RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SLITRK3O94933 977 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 CTNNA2P26232 953 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 BFSP1Q12934 665 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 AMHR2Q16671 573 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 OR6B3Q8NGW1 331 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 HAS1Q92839 578 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 CUEDC2Q9H467 287 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 RNPEPQ9H4A4 650 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 VTA1Q9NP79 307 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 ZNF112Q9UJU3 913 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 PPFIA4O75335 1185 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 DESP17661 470 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 CIITAP33076 1130 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 PSMC2P35998 433 aaKnown RBP11.17□□□□□ -0.62
COL6A3-205ENST00000392004 TNNC1P63316 161 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 MTFR1Q15390 333 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 KCNA10Q16322 511 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 NOL9Q5SY16 702 aaKnown RBP11.17□□□□□ -0.62
COL6A3-205ENST00000392004 GOLGA1Q92805 767 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 SNED1Q8TER0 1413 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 H0YCG3 227 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 HMGCRP04035 888 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 NR3C1P04150 777 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 TNFAIP3P21580 790 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 DNAJB2P25686 324 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 CCND3P30281 292 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-205ENST00000392004 MXI1P50539 228 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 UGCGQ16739 394 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 NFRKBQ6P4R8 1299 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 REPS2Q8NFH8 660 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 FAM149B1Q96BN6 582 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 ZBED3Q96IU2 234 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-205ENST00000392004 SENP7Q9BQF6 1050 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 SRRDQ9UH36 339 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 AGO2Q9UKV8 859 aaKnown RBP11.17□□□□□ -0.62
COL6A3-205ENST00000392004 MYH2Q9UKX2 1941 aa11.17□□□□□ -0.62
COL6A3-205ENST00000392004 TISP43B9A030 160 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 ERLIN1O75477 346 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 AKAP5P24588 427 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 CASP4P49662 377 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 EXOC3L4Q17RC7 722 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 NBPF20Q3BBV1 942 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 HSP90B2PQ58FF3 399 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 IQSEC1Q6DN90 963 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 MRPL4Q9BYD3 311 aaKnown RBP11.16□□□□□ -0.62
COL6A3-205ENST00000392004 TUFT1Q9NNX1 390 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 RSPH14Q9UHP6 348 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 KCNG1Q9UIX4 513 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 ARHGAP6O43182 974 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 ZRANB2O95218 330 aaKnown RBP eCLIP11.16□□□□□ -0.62
COL6A3-205ENST00000392004 NPTXRO95502 500 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 SMPD1P17405 629 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 OR1G1P47890 313 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 PSEN2P49810 448 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 PAK2Q13177 524 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 SPATA1Q5VX52 437 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 SCN4BQ8IWT1 228 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 XXYLT1Q8NBI6 393 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 TAF4BQ92750 862 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 ANKRD36BP1Q96IX9 119 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 CCSER1Q9C0I3 900 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 TMEM206Q9H813 350 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 ZCCHC17Q9NP64 241 aaKnown RBP11.16□□□□□ -0.62
COL6A3-205ENST00000392004 RBAKQ9NYW8 714 aaPredicted RBP11.16□□□□□ -0.62
COL6A3-205ENST00000392004 ANKRD62A6NC57 917 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 PIK3R2O00459 728 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 TBX3O15119 743 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 TGFB3P10600 412 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 CYP11B2P19099 503 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 SLC8A3P57103 927 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 KLHL30Q0D2K2 578 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 CELF3Q5SZQ8 465 aaKnown RBP11.16□□□□□ -0.62
COL6A3-205ENST00000392004 CC2D1AQ6P1N0 951 aaPredicted RBP11.16□□□□□ -0.62
COL6A3-205ENST00000392004 MTG1Q9BT17 334 aaPredicted RBP11.16□□□□□ -0.62
COL6A3-205ENST00000392004 IKZF4Q9H2S9 585 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 PCDHB4Q9Y5E5 795 aa11.16□□□□□ -0.62
COL6A3-205ENST00000392004 CCNE1P24864 410 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 PRPHP41219 470 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 OTOP2Q7RTS6 562 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 DAGLBQ8NCG7 672 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 UBE2TQ9NPD8 197 aaPredicted RBP11.15□□□□□ -0.62
COL6A3-205ENST00000392004 IKBKBO14920 756 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 ARIH2O95376 493 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 CCNE2O96020 404 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 POMCP01189 267 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 IVLP07476 585 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 RARRES1P49788 294 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 MYL7Q01449 175 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 KNOP1Q1ED39 458 aaKnown RBP11.15□□□□□ -0.62
COL6A3-205ENST00000392004 XRRA1Q6P2D8 792 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.15□□□□□ -0.62
COL6A3-205ENST00000392004 GLIS3Q8NEA6 775 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 GOLGA5Q8TBA6 731 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 NEK9Q8TD19 979 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 DESI2Q9BSY9 194 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 PPP2R2CQ9Y2T4 447 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 ZNF536O15090 1300 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 ROBO3Q96MS0 1386 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 A0A087X0B3 334 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 KCNA1Q09470 495 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms